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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACGAGAAACGCTTGCTTGCGTTCTGCTTCTTGTTGATGCTAGCATTGAACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAGgtactgaatgacgttacgtgtactcactgtatggtgatttgtgattgaaactgcccttcaatggctgaagtcgttagctagttggatttaattccagggatgatattgattgtttttcgtattcaactaaggtccaaatacggaagttttgcatctgaatctgaatctgtgattggcatctcttgtttcacag

Basic information

species Physcomitrella patens
transcript PP1S204_50V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162183149|gb|FC360104.1|FC360104
EST:     AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAG                         ATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGNNNNNNNNGAAG
genomic: AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAGgtactgaatg ... tgtttcacagATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGAAAAAAAAGAAG
EST: gi|162183148|gb|FC360103.1|FC360103
EST:     AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAG                         ATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGNNNNNNNNGAAG
genomic: AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAGgtactgaatg ... tgtttcacagATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGAAAAAAAAGAAG
EST: gi|15327107|gb|BI487587.1|BI487587
EST:     AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAG                         ATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGNNNNNNNNGAAG
genomic: AACCTCAACAAATCGATCTAGACTGCGTTGACTGGCTTGGTCGTAACAAGgtactgaatg ... tgtttcacagATACCAGTTACTATCGTGTTTACAAAATGCGACAGGAAGAAAAAAAAGAAG