1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAGAAGTTTCACGTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcctttgtcttcattatatggtggtactacaggctttgctgatgtagctttcatcgttgcccctaatatgcactgccacggtatcccagacag...
species | Physcomitrella patens |
transcript | PP1S204_118V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGG-ATCAACCGACCCCCEST: gi|162219953|gb|FC396768.1|FC396768
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCC
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|208352363|gb|DC902008.1|DC902008
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCANTTCTACTATTGAAAGCAGCTG GCGCGGANAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|162219952|gb|FC396767.1|FC396767
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|162204417|gb|FC381645.1|FC381645
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|162207263|gb|FC383300.1|FC383300
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|208359431|gb|DC953984.1|DC953984
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCAEST: gi|162207262|gb|FC383299.1|FC383299
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
EST: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTG GCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
genomic: GTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcc ... ggatttgcagGCGCGGAGAAGGGATCAACCGACCCCCAAAAAGTGAAGGTTGGCAAGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGAAGTTTCACGTTCATTTTGAAGACACCCCCAGCATCAGTTCTACTATTGAAAGCAGCTGgtaggcttcctttgtcttcattatatggtggtactacaggctttgctgatgtagctttcatcgttgcccctaatatgcactgccacggtatcccagacag
- - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG