1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCGATGGAATGGACTGCTTGGCTGTGAAGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatgctgttgttttcctaaccagcacatggatactttaccttcttctaatcatggggtttactccatttgctgtgtgttgcagctttacgtcagttatgtcgtaaccgagatgcttttgcttgggttctttttctgaattatattttctggcatggag
species | Physcomitrella patens |
transcript | PP1S201_84V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATG GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAEST: gi|208372750|gb|DC952637.1|DC952637
genomic: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatg ... tggcatggagGTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATG GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAEST: gi|208365046|gb|DC947310.1|DC947310
genomic: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatg ... tggcatggagGTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATG GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAEST: gi|37840758|gb|BJ598766.1|BJ598766
genomic: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatg ... tggcatggagGTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATG GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCA
genomic: AGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatg ... tggcatggagGTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGATGGAATGGACTGCTTGGCTGTGAAGCAGGCCGTGAAGTTCGCTAAGGAATACTCTTTGAAAAACGGTCCCATGgtaagtgatgctgttgttttcctaaccagcacatggatactttaccttcttctaatcatggggtttactccatttgctgtgtgttgcagctttacgtcagttatgtcgtaaccgagatgcttttgcttgggttctttttctgaattatattttctggcatggag
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA