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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGTCCTGTACAATGACGTCGATATGGTGTGGCTTGCTGATCCTTTCAGCTATTTCAAGAATAACCGTGAAGTCTACATCATAGATGACATGGCACTGgtactctttggcctcgtcatcttgttgtaatttagtagctcagaagtctgtagcgatacctcgtagtttcttgttggacttcttttctttcgagaggaaaaatcttaacacattccaagttcatcgccgcttcttttccagttatttagattggttgttggcgttggcag

Basic information

species Physcomitrella patens
transcript PP1S19_296V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S19_296V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G085042_T01 (Zea mays), 5'ss of exon 2
CAGCGTCCTGTACAATGACGTCGATATGGTGTGGCTTGCTGATCCTTTCAGCTATTTCAAGAATAACCGTGAAGTCTACATCATAGATGACATGGCACTGgtac-tctttggcctcgtcatcttgttgtaatttagtagctcagaagtctgtagcgatacctcgtagtttcttgttggacttcttttctttcgagaggaaaaatcttaacacattccaagttcatcgccgcttcttttccagttatttagattggttgttggcgttggcag
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CAGCGTCATGTACAACGACGTCGACATGGTGTGGCTTGCCGACCCGTTCGCTTACATCGTCGAGAATCACGACGTGTACTTTATGGACGATATGGCTCCTgtatgtgtctgtcgttgctgcttt--tgcagttggggctttggctggaagatagct-taattgggaagtgtggattgcattgcag--------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208367341|gb|DC951273.1|DC951273
EST:     CTATTTCAAGAATAANCCGTGAAGTCTACATCATAGATGACATGGCACTG                         TTGAAAACAGNGTACCATTCACATGCTTTACCGCCACCAGGGAAGAAGGGC
genomic: CTATTTCAAGAATAA-CCGTGAAGTCTACATCATAGATGACATGGCACTGgtactctttg ... gcgttggcagTTGAAAACAGAGTACCATTCACATGCTTTACCGCCACCAGGGAAGAAGGGC