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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATTCTGCCTTATATGAACCCCACAAGGGGTACTTTGCTGCTAAATCTAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcgatactccactttctttttaggatatcttgtatttatctttatgcagcatgctttgtgatttaactccaattttacagttcttccgcccctgactgtgatggaggtgcattgtttagctggattgtgatagaggattttaactggacatgttgcag

Basic information

species Physcomitrella patens
transcript PP1S199_22V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100352093|gb|BY964702.1|BY964702
EST:     TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAG                         GACGGGCTGCTTACAACAAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
genomic: TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcga ... catgttgcagGACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
EST: gi|18353878|gb|BJ185933.1|BJ185933
EST:     TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAG                         GACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
genomic: TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcga ... catgttgcagGACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
EST: gi|18350048|gb|BJ182099.1|BJ182099
EST:     TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAG                         GACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
genomic: TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcga ... catgttgcagGACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
EST: gi|100395236|gb|BY953648.1|BY953648
EST:     TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAG                         GACGGGCTGCTTACAACGAGTATTTGAGTAAGCTGTACAAGCAGCATGACA
genomic: TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcga ... catgttgcagGACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
EST: gi|100448323|gb|CJ972622.1|CJ972622
EST:     TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAG                         GACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA
genomic: TAATGCAGTTGGCGCCATAGCAGAGCCAATCAGGTTCGATCGCATCCCAGgcaagttcga ... catgttgcagGACGGGCTGCTTACAACGAGTATTTGAGTAAGTTGTACAAGCAGCATGACA