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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCTGCACATGATCTGCATCAGTCAGACTGTCTGGCTGATTTGAAACCAGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaagcctctctattcgccacccatttgttgttgaagttctttctcgtgatgtacaacaaatgctcaataaatctattcgtatcctcactttccttgctccaaacctcccttctcggtggacgactgttctaattatgtttatgcctgtcactgcag

Basic information

species Physcomitrella patens
transcript PP1S194_4V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197958|gb|FC373674.1|FC373674
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|37840557|gb|BJ598565.1|BJ598565
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|162213128|gb|FC389552.1|FC389552
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|162171360|gb|FC347259.1|FC347259
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|162197957|gb|FC373673.1|FC373673
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|37838675|gb|BJ596683.1|BJ596683
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|67692780|gb|BJ953013.1|BJ953013
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
EST: gi|67695299|gb|BJ955532.1|BJ955532
EST:     AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACG                         GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC
genomic: AGGCGATTGCGTTGAGGTGCAATGGCGTAGGAACAAAGATTTCCCTTACGgtaagttcaa ... gtcactgcagGGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTC