1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATCGATACTTCTATGATATATCTGGCCTTCCTGTGGTCGACCATGAGCACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatcacttttaccacacttaacttcagctcttgtgtgccatgcagatcttatgaactggaaacctgtatgtatgcccattttctttgtttgggt...
species | Physcomitrella patens |
transcript | PP1S189_99V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAA-CATCAAAT CTGAAAACAAAG-TGAAGGATGTCATGACCACACCAEST: gi|162169624|gb|FC345564.1|FC345564
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGGTGAAGGATGTCATGACCACACCA
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCTEST: gi|100439010|gb|BY961915.1|BY961915
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCT
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAAACAA-GGT-AAGGGATGTCATGACCACACCAGCAATCACCTTACEST: gi|100417562|gb|BY975543.1|BY975543
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAA-CAAAGGTGAAGG-ATGTCATGACCACACCAGCAATCACCTTAC
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAACAAAGGEST: gi|100378927|gb|BY986487.1|BY986487
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGG
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGGCA-TCACCTTAACEST: gi|162228632|gb|FC405452.1|FC405452
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGGTGAAGGATGTCATGACCACACCAG-CAATCACCTTACC
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCTEST: gi|208391806|gb|DC942340.1|DC942340
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCT
EST: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAAT CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCT
genomic: ACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatc ... tggtcaacagCTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCGATACTTCTATGATATATCTGGCCTTCCTGTGGTCGACCATGAGCACAAATGCGTTGGAGTTCTTTCCAAAAAAGATCGATCAAAAACATCAAATgtcagtgatcacttttaccacacttaacttcagctcttgtgtgccatgcagatcttatgaactggaaacctgtatgtatgcccattttctttgtttgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG