Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag

Basic information

species Physcomitrella patens
transcript PP1S17_306V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 5'ss of exon 3
CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag
||||||||||||| | ||||| || || |||||||| | ||| ||||| |  ||  | ||||||||||||||||| || ||||||||||| || |||||||| |   |  | || || |||         ||     |  | |  |  | | ||| | |         |||  |  | | |                                   
CTCCTTGGCTGATCTTCAGAACGATGAGGATCAGGCGTACCGTAAGATCAGACTACGTGCCGAGGATGTGCAGGGGAAAAATGTTCTTACAAACTTCTGGgtaatgctt-ctcttactgtg----caaaattacttctccaggttg--taatttttgttgttaaccagttg--tattgtag-----------------------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ11589 (Selaginella moellendorffii), 5'ss of exon 4
CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag
 ||  | || || |||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||||| || |||  ||| ||||| || || |||||||| |||  ||   |         | |  || | || | || ||       |||   ||                                                          
GTCGCTTGCGGACTTGCAGAATGACGAGGATCACGCCTTCCGGAAGATCAAGCTCAGGGCCGAGGATGTCCAAGGCCGGAACGTTCTCACGAACTTCTGGgttagag-aattttgttttctccttttgtgctagcttcat-tgttttcatactcatgcag--------------------------------------------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 4
CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag
 ||  |||| || |||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||||| || |||  ||| ||||| || || |||||||| |||  ||   |   | |   ||| |  |||    |    ||   ||   |||      ||||                                                   
GTCGCTGGCGGACTTGCAGAATGACGAGGATCACGCCTTCCGGAAGATCAAGCTCAGGGCCGAGGATGTCCAAGGCCGGAACGTTCTCACGAACTTCTGGgtaagag-aatttt---cttttctctccaattg----tgctagcttcattgttttcatgttcctgcag------------------------------------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 4
CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgt--gagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag
 ||  |||| || |||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||||| || |||  ||| || || || || ||||||||  ||||||   | |  |  | || ||    |  | |||  ||   |    |||||      | ||                                                   
GTCGCTGGCGGACTTGCAGAATGACGAGGATCACGCCTTCCGGAAGATCAAGCTCAGGGCCGAGGATGTCCAAGGCCGGAACGTCCTCACGAACTTCTGGgtaagagaattttcttttctctcgtgctagcttcagtatttgat--tgttccactttcatgctcgtgcag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376861|gb|DC918774.1|DC918774
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208399084|gb|DC904493.1|DC904493
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|37844843|gb|BJ602851.1|BJ602851
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208344601|gb|DC909160.1|DC909160
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162268511|gb|FC444384.1|FC444384
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208389506|gb|DC929431.1|DC929431
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18332464|gb|BJ164477.1|BJ164477
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18358607|gb|BJ190666.1|BJ190666
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162276956|gb|FC453054.1|FC453054
EST:     GGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: GGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|37821343|gb|BJ579409.1|BJ579409
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|100426483|gb|BY958921.1|BY958921
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18374279|gb|BJ205857.1|BJ205857
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208400702|gb|DC904880.1|DC904880
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18351511|gb|BJ183563.1|BJ183563
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18343480|gb|BJ175518.1|BJ175518
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208399117|gb|DC908226.1|DC908226
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208351416|gb|DC922111.1|DC922111
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162264535|gb|FC440857.1|FC440857
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|67718647|gb|BJ968906.1|BJ968906
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162264534|gb|FC440856.1|FC440856
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTTTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTTTTTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162268510|gb|FC444383.1|FC444383
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208354480|gb|DC953858.1|DC953858
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208356062|gb|DC918386.1|DC918386
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162279348|gb|FC455271.1|FC455271
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162277303|gb|FC453733.1|FC453733
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|67727072|gb|BJ977331.1|BJ977331
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162278252|gb|FC454591.1|FC454591
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|67724806|gb|BJ975065.1|BJ975065
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208361818|gb|DC939040.1|DC939040
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162227858|gb|FC403666.1|FC403666
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208387862|gb|DC929206.1|DC929206
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208349984|gb|DC910219.1|DC910219
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162277304|gb|FC453734.1|FC453734
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|100417991|gb|BY993284.1|BY993284
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|18331779|gb|BJ163790.1|BJ163790
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208362474|gb|DC943729.1|DC943729
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162227859|gb|FC403667.1|FC403667
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208376911|gb|DC906852.1|DC906852
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208397993|gb|DC920725.1|DC920725
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208378354|gb|DC923025.1|DC923025
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208367617|gb|DC943964.1|DC943964
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|67716290|gb|BJ966550.1|BJ966550
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208377740|gb|DC940852.1|DC940852
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|208396266|gb|DC924060.1|DC924060
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG
EST: gi|162279347|gb|FC455270.1|FC455270
EST:     AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTATTAATTTCTGG                         GGCATGGACTTGACGACGGACAAGCTGCGGTTTTTGGTGCGTAAGTGGCAG
genomic: AGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 80

CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataa ... gttggtgtagGGCATGGACTTGACGACGGACAAGCTGCGGTCTCTGGTGCGTAAGTGGCAGAGTTTGATTGAGGCTCACGTGGATGTCAAGACTACAGACAACTACCAGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCGAGGATGTGCAGGGCAAGAATGTTCTTACTAATTTCTGGgtgagaataaccctaaccgtggttctgctgttggcattatatgccggatgactttggctaacctgggattgcctgctatggctgaaattgacatcgttgataagtggttggtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA