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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGGTGGTTCCCGAGCAGCTGTTTATGTTAAGCAAAATCTCTTCAAGAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatggttcacccttgagaatgactgctggtgtatttgtcagtgtctcaccaccgaattgttcctgtattcttgcggaaggcgctactaaaggaattggtccatttagttaagctatgattgttcaccctgtattttggaagtctccgtaaataatatcgcctgagtcgttaatatcttgtgttgatctgacag

Basic information

species Physcomitrella patens
transcript PP1S174_123V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377763|gb|DC940875.1|DC940875
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208384917|gb|DC903424.1|DC903424
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208378846|gb|DC927548.1|DC927548
EST:     GAACTTGTTAGAACATCCTCAATTNGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208396538|gb|DC915850.1|DC915850
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208366958|gb|DC951445.1|DC951445
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208358259|gb|DC939399.1|DC939399
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208352848|gb|DC917812.1|DC917812
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208382176|gb|DC914823.1|DC914823
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACNAANGTCGCANTTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208381088|gb|DC903916.1|DC903916
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|162254449|gb|FC430662.1|FC430662
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100418751|gb|BY975722.1|BY975722
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACA-CC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208386007|gb|DC956523.1|DC956523
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208355611|gb|DC906591.1|DC906591
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208386792|gb|DC937184.1|DC937184
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100412818|gb|BY992451.1|BY992451
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208356189|gb|DC902225.1|DC902225
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100431608|gb|BY960283.1|BY960283
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACA-CC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208357765|gb|DC902303.1|DC902303
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100439819|gb|BY980255.1|BY980255
EST:     AACTTGTTAGAACATCCTNCA-TTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAATAGATAATGAGTATCTTAAGTCTGAGAACA-CC
genomic: AACTTGTTAGAACATCCT-CAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208351894|gb|DC913793.1|DC913793
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|162223094|gb|FC399985.1|FC399985
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACCAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208390818|gb|DC938397.1|DC938397
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|18355222|gb|BJ187281.1|BJ187281
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100353890|gb|BY983361.1|BY983361
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGNCAA-CAGATAATGAGTATCTTAAGTCTGAGAACAAC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAG-CAAACAGATAATGAGTATCTTAAGTCTGAGAACAAC
EST: gi|37852052|gb|BJ610060.1|BJ610060
EST:     TCACTGACACGAAGNTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACANCC
genomic: TCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208354285|gb|DC957463.1|DC957463
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100438994|gb|BY961907.1|BY961907
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100404154|gb|BY955282.1|BY955282
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|100430804|gb|BY978405.1|BY978405
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|18372532|gb|BJ204134.1|BJ204134
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208377647|gb|DC932183.1|DC932183
EST:     GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: GAACTTGTTAGAACATCCTCAATTTGTCACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
EST: gi|208361054|gb|DC946687.1|DC946687
EST:     CACTGACACGAAGGTCGCAATTG                         CTGAGACCTACAAGCNAACAGATAATGAGTATCTTAAGTCTGAGAACAACC
genomic: CACTGACACGAAGGTCGCAATTGgtatgtaatg ... gatctgacagCTGAGACCTACAAGCAAACAGATAATGAGTATCTTAAGTCTGAGAACAACC