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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag

Basic information

species Physcomitrella patens
transcript PP1S169_19V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
|| |||||  | |||||||| |||||| | |||||||||||||||||||||||  | || ||||| || || || ||  | |||||||          |||||| ||    | |||   || |    | ||| |   |     ||| ||  |    | |  ||  |  || |  |||    |  |||                                                                
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta--------tcatagtcgtc---cttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatat--cttcatttgcacag---------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G899149_T01 (Zea mays), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaa-gtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
|| |||||  | |||||||| |||||| | |||||||||||||||||||| ||  | |||||||| || || || ||| | |||||||  ||  | |   |  | |      | |||| || ||  |  | | |  |         |  |||||     |   | ||   |  |||                                                                            
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgtactgtagatatccttatttcttgcatgatttaattta--atttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag--------------------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G899149_T02 (Zea mays), 5'ss of exon 2
---------------GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaa-gtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
               || |||||  | |||||||| |||||| | |||||||||||||||||||| ||  | |||||||| || || || ||| | |||||||  ||  | |   |  | |      | |||| || ||  |  | | |  |         |  |||||     |   | ||   |  |||                                                                            
TTGCTGTACTTGCAGGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgtactgtagatatccttatttcttgcatgatttaattta--atttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag--------------------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA14G38950.1 (Glycine max), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
||||||||| | ||| ||||||||||  | ||||||||||| |||||||| ||| | |||||||| |||||||| || || ||  ||||             | |||  || | || | | |   |  |  ||  |            ||||| ||     ||||   ||||   |||    ||     |  |    |   |    |||                                          
GACAAGGCCATCAAGAGGTTTTTGGTTAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaa-------------ttttcttatccgttatttat-ttatttatttttagga---------aaatttcacatctgttt---atgttgtttatttgtttttttttttaaattgtttatgtgcag-----------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattac--aacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
||||||||| | ||| ||||| ||||| | ||||||||||| |||||||| ||| | |||||||| |||||||| || || ||  |||| |             ||| ||||| || | | |  ||  |||  |    | |   |  ||  |||   |   |  ||||  |    | |     ||| ||                                                                
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaact-------------ttctaattcgttatttttttca--tgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag---------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G56340.1 (Arabidopsis thaliana), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcatt-----ttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
||||||||  | ||| | ||| | ||  | ||||||||||||||||||||| |  | ||||| ||||||||| |||| ||||| |||| |||  || |  | ||||   || ||||     || ||||        || |    || ||    | | |  ||  || ||||| || ||  || | |||   |                                                                
GACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGgtatgtgttgatag-attcttgttatgcattgttaattgtgtatttggaattttgttttga-gacttcagagtgtaattgg-ttttgtatttgtattgc-attggtag---------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 3
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag
||||| ||  | ||| ||||| ||||| | |||||||| ||||| |||||||| |||||||||||||||||||| || || ||| |||| |        |  | |   ||| | || ||| | |  | |  |||    | | || | |      | || | ||||     ||   || | | ||   |                                                               
GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATAgtaattc-------ttctttatcaatactttctatcttcttcttctttatggtg-atgatgat------ccactgagttt-----gtatttttctacttgtgaag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228482|gb|FC404431.1|FC404431
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67723878|gb|BJ974137.1|BJ974137
EST:     TATTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|208387340|gb|DC933091.1|DC933091
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162239540|gb|FC417979.1|FC417979
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18331275|gb|BJ163284.1|BJ163284
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162201620|gb|FC378282.1|FC378282
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162201619|gb|FC378281.1|FC378281
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67571052|gb|BJ943876.1|BJ943876
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162268529|gb|FC444402.1|FC444402
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162241701|gb|FC417228.1|FC417228
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67716842|gb|BJ967101.1|BJ967101
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18374914|gb|BJ206492.1|BJ206492
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18341200|gb|BJ173233.1|BJ173233
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162242312|gb|FC416094.1|FC416094
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|37822905|gb|BJ580971.1|BJ580971
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67703717|gb|BJ963950.1|BJ963950
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|208377368|gb|DC906637.1|DC906637
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|208364047|gb|DC947235.1|DC947235
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|37833508|gb|BJ591520.1|BJ591520
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162243575|gb|FC419512.1|FC419512
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162268530|gb|FC444403.1|FC444403
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67725360|gb|BJ975619.1|BJ975619
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18356574|gb|BJ188633.1|BJ188633
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162221374|gb|FC398535.1|FC398535
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18359686|gb|BJ191747.1|BJ191747
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18343709|gb|BJ175747.1|BJ175747
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67709802|gb|BJ965618.1|BJ965618
EST:     TATTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18349005|gb|BJ181054.1|BJ181054
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67709312|gb|BJ965128.1|BJ965128
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67578123|gb|BJ950290.1|BJ950290
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|67694360|gb|BJ954593.1|BJ954593
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|19781336|gb|BQ039687.1|BQ039687
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162277116|gb|FC453338.1|FC453338
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|208395101|gb|DC920514.1|DC920514
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162220442|gb|FC395979.1|FC395979
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|37835973|gb|BJ593985.1|BJ593985
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|18342387|gb|BJ174422.1|BJ174422
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162261378|gb|FC437811.1|FC437811
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162204729|gb|FC381125.1|FC381125
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162271874|gb|FC448084.1|FC448084
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
EST: gi|162243574|gb|FC419511.1|FC419511
EST:     TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG                         GGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG
genomic: TGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 117

GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcag ... tgtgttgcagGGTATGTGCTCCCCAAGTTGTACGCCAAGATGCAATACTGCATTTCTTGTGCTATCCATTCACACGTCGTTCGTGTGAGATCACGGGAGGCACGAAGGAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag

- - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC