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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACAGTATTCAAGCAAGAGCATTATCTTGCCAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcacagttcaaatcttccataaattatttcgaactcgtaatcttacatctgaaactgttttggattctcataaaaggatttttttcattattaga...

Basic information

species Physcomitrella patens
transcript PP1S168_70V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391163|gb|DC942075.1|DC942075
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18360636|gb|BJ192699.1|BJ192699
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|100386703|gb|BY970244.1|BY970244
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGCTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|162194861|gb|FC370525.1|FC370525
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18345963|gb|BJ178006.1|BJ178006
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18359483|gb|BJ191544.1|BJ191544
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|100405914|gb|BY991447.1|BY991447
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|162162825|gb|FC338087.1|FC338087
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18365419|gb|BJ197494.1|BJ197494
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|162181557|gb|FC358171.1|FC358171
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18346813|gb|BJ178858.1|BJ178858
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18369304|gb|BJ201390.1|BJ201390
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGGGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18367821|gb|BJ199904.1|BJ199904
EST:     CAACTTTGTTCANGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18366141|gb|BJ198219.1|BJ198219
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18371368|gb|BJ202970.1|BJ202970
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|100368990|gb|BY984972.1|BY984972
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|67575939|gb|BJ948763.1|BJ948763
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|162193559|gb|FC370462.1|FC370462
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|208384123|gb|DC911259.1|DC911259
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|162164264|gb|FC342079.1|FC342079
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
EST: gi|18360603|gb|BJ192666.1|BJ192666
EST:     CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAG                         GCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA
genomic: CAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcaca ... tcctgtgcagGCTCCAACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACAGTATTCAAGCAAGAGCATTATCTTGCCAACTTTGTTCAGGCTACCTTCGATGCTCTTCCTTCGGAGAAAGTGAAAGgtgttgcacagttcaaatcttccataaattatttcgaactcgtaatcttacatctgaaactgttttggattctcataaaaggatttttttcattattaga

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