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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACGTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGgtcagttccttctctttggtccttcgcagtccaagggtatatcttacacaagatcgtaaggtaaaccatttttaggtcagttgcgtctcgcggaagctgc...

Basic information

species Physcomitrella patens
transcript PP1S165_3V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_3V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACGTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGgtcagttccttct--ctttggtccttcgcagtccaagggtatatcttacacaagatcgtaaggtaaaccatt----tttaggtcagttgcgtctcgcggaagctgc------------
|||||||||||| |||||| ||||||||||| |||||||| ||||| ||||  || ||||| ||||||||    ||||||||||| || || || || ||||     |||| |  ||||  | |  |     ||   |  |||   |  ||||  |    |  |      ||    |||| |  ||||  || | |       ||             
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgttttt-ttgtttttttctgaag