1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGCTTTGATTCCGAAGGTACTGAAGTCGTTAGGCCGTATACCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttccttcgcacccgatcgcgttatatccaaacttgtgtgattctgtattgaccgaatcgtaatacatatactgtacatgataagcgctgatgttggagttattcttttttaatcgaattagctcatcctgtcttgcaattttttcag
species | Physcomitrella patens |
transcript | PP1S165_105V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100411604|gb|BY992247.1|BY992247
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100422280|gb|BY976296.1|BY976296
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208352513|gb|DC910213.1|DC910213
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|162232093|gb|FC407695.1|FC407695
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100409366|gb|BY991976.1|BY991976
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100448582|gb|CJ972881.1|CJ972881
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100390506|gb|BY952914.1|BY952914
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATNTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208358223|gb|DC939391.1|DC939391
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|162216664|gb|FC392730.1|FC392730
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208368598|gb|DC940019.1|DC940019
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208365412|gb|DC950879.1|DC950879
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100375067|gb|BY949170.1|BY949170
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATNTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGNAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100384199|gb|BY950585.1|BY950585
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208391805|gb|DC942339.1|DC942339
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|100390026|gb|BY989106.1|BY989106
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|162222464|gb|FC397198.1|FC397198
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208378861|gb|DC927563.1|DC927563
genomic: CCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208374639|gb|DC931978.1|DC931978
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGCEST: gi|208357969|gb|DC938840.1|DC938840
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
EST: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAG GTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
genomic: CCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttc ... attttttcagGTTTACAAGGAAGGGAAAGTGTCGTCTTACTTCGGTCGCATGAAGGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTTTGATTCCGAAGGTACTGAAGTCGTTAGGCCGTATACCCCCACCACCCTCGATTCCGACCTTGGTTATTTTGAGCTTGTTGTCAAGgtgagatttccttcgcacccgatcgcgttatatccaaacttgtgtgattctgtattgaccgaatcgtaatacatatactgtacatgataagcgctgatgttggagttattcttttttaatcgaattagctcatcctgtcttgcaattttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT