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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCTTGATGTGTTCCGgtgaggctcttttccttccccctcttgtcttgatctgtagttgccattcatgttttagcggttggcagcgactgttttgtttttgagctatattttgattttgtataattttcgtatatgcag

Basic information

species Physcomitrella patens
transcript PP1S1655_2V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1655_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G21570.1 (Glycine max), 5'ss of exon 8
CTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCTTGATGTGTTCCGgtgaggctcttttccttccccctcttgtcttgatc-tgtagttgccattcatgttttagcggttggcagcgactgttttgtttttgagctatattttgattttgtataattttcgtatatgcag
|||||   ||||||||| ||||||| ||   |||||| |||||||||||||||| |||||| ||| |||     |  |         |   || | | ||   ||| | | | | |  |  |  ||   || | |  ||   |    | | ||    ||||||| |                         
CTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAGgta---tttataattgaaatcggattatgtagaaaatgttgatacaactatttatgcagttttttgtattgatattaacctgtatggaaaatattttcag------------------------