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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCAAGTTTGTGGAGGTCGCCAATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttctatccctagttctcaagccatctgatttttgtttgttgactatgcgacagcttttattattaaaattgttttatataaggctgagattct...

Basic information

species Physcomitrella patens
transcript PP1S161_69V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S161_69V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G03880.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCGCAAGTTTGTGGAGGTCGCCAATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatg-atttctatccctagttctcaagccatctgatttttgtttgttgactatgcgacagcttttattattaaaattgttttatataaggctgagattct---------------
||  || | |   |||    || ||    |||||| | ||||| |||||||||||||| || |||||||||||||||| || | ||      ||      |     | ||||       ||   | |  |    |||||  |||| ||    |  | | |    ||    |||                
GGATCACGGTAAAGGAAACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatatataatgactgtgtgtttgattgttcatttagacacatttggtttctgttttcttttgatattgaatgaatgatttctttttctccatttccggtatgcgaatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100383733|gb|BY969262.1|BY969262
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         NTGTCCTTTTTGCCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCC-GAAAG
EST: gi|208356345|gb|DC914263.1|DC914263
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208347657|gb|DC912874.1|DC912874
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162220242|gb|FC395675.1|FC395675
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162244692|gb|FC424620.1|FC424620
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100443622|gb|BY963719.1|BY963719
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162261087|gb|FC436948.1|FC436948
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100447702|gb|CJ972001.1|CJ972001
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208397284|gb|DC920638.1|DC920638
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162280257|gb|FC456274.1|FC456274
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100366064|gb|BY967267.1|BY967267
EST:     ATCCAGGGCCTANGGCCTGAAAA-CCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: ATCCAGGGCCTA-GGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208368034|gb|DC951031.1|DC951031
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208352188|gb|DC901709.1|DC901709
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208366501|gb|DC955591.1|DC955591
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100366425|gb|BY985128.1|BY985128
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100442724|gb|BY981549.1|BY981549
EST:     AATCCAGGGCCTAGGGCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208396796|gb|DC924352.1|DC924352
EST:     CCTG-AAAACCCA-TGAGA-TTACGAG-TTGAA-G                         NTGTCC-TTTTGCCGAAAG
genomic: CCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|67574623|gb|BJ947447.1|BJ947447
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100435541|gb|BY960964.1|BY960964
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100424873|gb|BY976859.1|BY976859
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTTGC-GAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTT-GCCGAAAG
EST: gi|100423558|gb|BY958312.1|BY958312
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         T-GTCCTTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTT-GCCGAAAG
EST: gi|208387599|gb|DC953341.1|DC953341
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100369468|gb|BY948108.1|BY948108
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100380050|gb|BY968821.1|BY968821
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162241946|gb|FC414431.1|FC414431
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162264022|gb|FC439252.1|FC439252
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100354445|gb|BY945866.1|BY945866
EST:     TCCAGGGCCTAGGGCCTGAAAAACCCCATTGAGATTTACGAGTTTGGAGG                         G
genomic: TCCAGGGCCTAGG-CCTGAAAAACCC-ATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccag-
EST: gi|100354445|gb|BY945866.1|BY945866
EST:     TCCAGGGCCTAGGGCCTGAAAAACCCCATTGAGATTTACGAGTTTGGAGG                         G
genomic: TCCAGGGCCTAGG-CCTGAAAAACCC-ATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccag-
EST: gi|100376692|gb|BY949418.1|BY949418
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100362811|gb|BY947540.1|BY947540
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100425007|gb|BY976925.1|BY976925
EST:     AATCCAGGGCCTAGGCCTGAAAAACC-ATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100435787|gb|BY961090.1|BY961090
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100385585|gb|BY969922.1|BY969922
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTTGCCCGAA-G
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTT-GCC-GAAAG
EST: gi|100360765|gb|BY965889.1|BY965889
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCCGAA-G
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCC-GAAAG
EST: gi|100446324|gb|CJ970623.1|CJ970623
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208355733|gb|DC910527.1|DC910527
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208376080|gb|DC906767.1|DC906767
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162246188|gb|FC421947.1|FC421947
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162280256|gb|FC456273.1|FC456273
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100448401|gb|CJ972700.1|CJ972700
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|67572958|gb|BJ945782.1|BJ945782
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100355829|gb|BY965167.1|BY965167
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100365628|gb|BY966691.1|BY966691
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100430620|gb|BY978311.1|BY978311
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100421915|gb|BY957784.1|BY957784
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCC-TTTTTGCCGAAAG
EST: gi|162250211|gb|FC427936.1|FC427936
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100400212|gb|BY990835.1|BY990835
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162279511|gb|FC455822.1|FC455822
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100376949|gb|BY949544.1|BY949544
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208382473|gb|DC928007.1|DC928007
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|19781457|gb|BQ039711.1|BQ039711
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208370000|gb|DC940335.1|DC940335
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100390791|gb|BY989274.1|BY989274
EST:     AATCCAGGGCCTAGGCCTGAAAA-CCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAA
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|208391768|gb|DC937972.1|DC937972
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|67571810|gb|BJ944634.1|BJ944634
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100441814|gb|BY962905.1|BY962905
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|67698040|gb|BJ958273.1|BJ958273
EST:     CTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: CTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100370960|gb|BY968140.1|BY968140
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162224220|gb|FC399492.1|FC399492
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|100415791|gb|BY993005.1|BY993005
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         GTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG
EST: gi|162264023|gb|FC439253.1|FC439253
EST:     AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGG                         TTGTCCTTTTTGCCGAAAG
genomic: AATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 19 (downstream exon)
Score: 50

GGCGCAAGTTTGTGGAGGTCGCCAATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttc ... cctactccagTTGTCCTTTTTGCCGAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGCAAGTTTGTGGAGGTCGCCAATCCAGGGCCTAGGCCTGAAAAACCCATTGAGATTTACGAGTTTGAAGGgtatgatttctatccctagttctcaagccatctgatttttgtttgttgactatgcgacagcttttattattaaaattgttttatataaggctgagattct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG