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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGTCTCTCGTACGGATTTGAGgtataaagaacacaaaaactgtttttatacttttgagagcatctgaaagtgatctagattagtggcttcatcaattttttggtggaagtcagtttagggt...

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360118|gb|BJ192180.1|BJ192180
EST:     ATGGTGTCTCTCGTACGGATTTGAG                         TGTAAGGCAACCCGTTTGGCAACAATGGATAAGA
genomic: ATGGTGTCTCTCGTACGGATTTGAGgtataaagaa ... cgttcatcagTGTAAGGCAACCCGTTTGGCAACAATGGATAAGA
EST: gi|18372309|gb|BJ203911.1|BJ203911
EST:     ATGGTGTCTCTCGTACGGATTTGAG                         TGTAAGGCAACCCGTTTGGCAACAATGGATAAGACGTTACGCAGCAGGGTC
genomic: ATGGTGTCTCTCGTACGGATTTGAGgtataaagaa ... cgttcatcagTGTAAGGCAACCCGTTTGGCAACAATGGATAAGACGTTACGCAGCAGGGTC
EST: gi|18372886|gb|BJ204488.1|BJ204488
EST:     ATGGTGTCTCTCGTACGGATTTGAG                         TGTAAGGCAACCCGTTTGGCAACAATGGATAAGAC
genomic: ATGGTGTCTCTCGTACGGATTTGAGgtataaagaa ... cgttcatcagTGTAAGGCAACCCGTTTGGCAACAATGGATAAGAC