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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca...

Basic information

species Physcomitrella patens
transcript PP1S152_141V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctt--tttcagtctatgtccatgttttccccaaggttagtgataaggca
 ||||||||||||||| | ||   |||||| |||||||||||| | |||||||||||||| ||||| |||||||| |||||||| |||||| | ||  ||||||   ||  | ||   |  |   ||| |   ||         |  ||||    |  |||   |  ||  |  |||||||     | ||| || ||     
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtat---atttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcattg-gcttaatg-tag----

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttct-ttttcagtctatgtccatgttttccccaaggttagtgataaggca
 ||||||||||||||| | ||   |||||| |||||||||||| | ||||| |||||| | || || |||||||| |||||||| |||||| | ||| |||||  |  | | |||    | |   ||| ||    || ||    |  || | |||   |||  |  ||| |   ||||||     | ||| ||        
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGGCGCAAGTTGGGCGGACTCAGGGTGCTCAACTCCTACTGGGTGAACGAGgtacat--ttcactttactgagat-ctttcaaagatgattatcaacaatgtatctgccttccattaatgacttggttttctttg-gtttaatgcag-----

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca----
 ||||||||||||||| | ||   ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||| | ||  |||||||       |||  | | ||       | ||   | |  | |  |||||  |  ||  |||  |    |||      |      | || |   | ||    
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatg-------cttaattgagttgagcttaacaagatatcatgagaattttcatcctt--gtcagtactgatgccacatctggctcttgttactggacaacag

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgta----tgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgtttt-ccccaaggttagtgataaggca-
 ||||||||||||||| | ||   ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||| | ||  |||||    || ||||      |  ||    |||| | ||   |    | |  |||||  |  |  |||   |    |||  ||  | |   |||| ||| |   || 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttgaaatcttgaattgtgccgagcttataacaagatagcatgagaattttcatcct--agttagtactgatgccttatctccttgttactga-acaacag

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G084757_T02 (Zea mays), 5'ss of exon 2
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca----
 ||||||||||||||| | ||   ||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| | ||  ||||||    |    |   ||| |    ||| | ||   |    | |  |||||  |  |  |||   |    |||  ||  |      | || |     ||    
CCAGCTCAAGTTCCAGAGGAACAAGAGATCTGTTGCTGAGGAACGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatact-tgaattgagtcgaga---ttataacaagatagcatgaggattttcatcct--agttagtactgatgccttatctcgctcttgttactgaacaacag

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G024354_T01 (Zea mays), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgta--------tgtaatccgc-ttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca
 ||||||||||||||| | ||   ||||||||| ||||||||| | |||||||| ||||||||||| || |||||||| ||||| |||||| | ||  |||||        |||||   |    || | | | |   | |  ||  | ||  |||   |    |||||   ||||  | | ||   | ||||    |  |   |  |  
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTCGCTGAGGAGAGAGCTGGACGTAAGCTTGGTGGACTGAGGGTTCTTAACTCCTACTGGGTGAATGAGgtacatcggattgtaacatgaacactcctctttaaacatactagcttgtttatatctgtcaaattttttt-tctaattgcctgacatgcccatatctcctatcacag--

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttt--tcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca
 || || || || ||||| |    |||||||||||| |||||||| |||||| | ||| | ||||| |||||||||||||| || |||||| | ||  |||||||| |||      ||   |  | | | | | |  | |    |  | | |  |     | | |||||    |||| ||     ||               
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgttatgtgttgttacag---------------

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca-------
||||||||| |||||||||| |  ||| |||||||||||||| || ||||| ||||| || || || || |||||| | ||||| |||||| ||||  ||||||| |   | ||  ||   || |||     |  ||   || | | | | |  |  |  ||| |     || ||         | || ||  |  ||         
ACAGCTCAAATTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaat--agtatggaatcaagtgagtaatg-gtttggttctctggttttctcag

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 5'ss of exon 3
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgctt-cttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccc-caaggttagtgataaggca
 ||||| || || || || |    | | ||  |||| ||||| || |||||||| ||||| ||||| |||| ||||||||||||||| ||||||||  |||| ||||      || || | | |   |   | |  ||| | || | | ||    || | |  | |  |  | ||||  |   | || || |  | | |   
TCAGCTGAAATTTCAACGCAGCAAGCGTTCAATTGCAGAGGAACGTGCTGGACGGAAGCTGGGTGGTCTCAAGGTTCTCAACTCTTATTGGATCAATGAGgtctgtatagaatttactgcacttatttcctacctatgtat-ctcagtcttcgagttctgctatttgggcacttgttagcatgctagttttggtacatgat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716632|gb|BJ966892.1|BJ966892
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67723959|gb|BJ974218.1|BJ974218
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|7147834|gb|AW509756.1|AW509756
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|15729871|gb|BI741529.1|BI741529
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|19790006|gb|BQ041638.1|BQ041638
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162249592|gb|FC426784.1|FC426784
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|6167181|gb|AW145445.1|AW145445
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGAT
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGAT
EST: gi|67725985|gb|BJ976244.1|BJ976244
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67716681|gb|BJ966941.1|BJ966941
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18337734|gb|BJ169758.1|BJ169758
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|19789278|gb|BQ041210.1|BQ041210
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|7148070|gb|AW509992.1|AW509992
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATGCCCAGCACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162274706|gb|FC450486.1|FC450486
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18324928|gb|BJ156923.1|BJ156923
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67724568|gb|BJ974827.1|BJ974827
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18326722|gb|BJ158721.1|BJ158721
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTA
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTA
EST: gi|7584140|gb|AW700037.1|AW700037
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|208350163|gb|DC926118.1|DC926118
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|19789414|gb|BQ041295.1|BQ041295
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162265202|gb|FC441289.1|FC441289
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18329917|gb|BJ161923.1|BJ161923
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162204518|gb|FC380810.1|FC380810
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|15262161|gb|BI437471.1|BI437471
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18339110|gb|BJ171136.1|BJ171136
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162262887|gb|FC438773.1|FC438773
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18334710|gb|BJ166727.1|BJ166727
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162274720|gb|FC450487.1|FC450487
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67723877|gb|BJ974136.1|BJ974136
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|19789540|gb|BQ041367.1|BQ041367
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162262914|gb|FC438774.1|FC438774
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67710289|gb|BJ965952.1|BJ965952
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|7147831|gb|AW509753.1|AW509753
EST:     GACGCAAGCTTGGTGGGCTCAAGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67709674|gb|BJ965490.1|BJ965490
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67723750|gb|BJ974009.1|BJ974009
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67720626|gb|BJ970885.1|BJ970885
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162223158|gb|FC398788.1|FC398788
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCCTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67709801|gb|BJ965617.1|BJ965617
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162267259|gb|FC442671.1|FC442671
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162204517|gb|FC380809.1|FC380809
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67717468|gb|BJ967727.1|BJ967727
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162267258|gb|FC442670.1|FC442670
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|208396192|gb|DC923986.1|DC923986
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACN
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162207538|gb|FC383783.1|FC383783
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|100398906|gb|BY990575.1|BY990575
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67712861|gb|BJ966310.1|BJ966310
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162223159|gb|FC398789.1|FC398789
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCCTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67724214|gb|BJ974473.1|BJ974473
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67709881|gb|BJ965697.1|BJ965697
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|6227523|gb|AW156122.1|AW156122
EST:     GACGCAAGCTTGGTGGGCTCAAGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAAT
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAAT
EST: gi|37840911|gb|BJ598919.1|BJ598919
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67720619|gb|BJ970878.1|BJ970878
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67709625|gb|BJ965441.1|BJ965441
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|18363752|gb|BJ195824.1|BJ195824
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACAC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACAC
EST: gi|208353095|gb|DC910146.1|DC910146
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67725202|gb|BJ975461.1|BJ975461
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|162227057|gb|FC402258.1|FC402258
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|19782582|gb|BQ039872.1|BQ039872
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|7067172|gb|AW497027.1|AW497027
EST:     GACGCAAGCTTGGTGGGCTCANGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
EST: gi|67725152|gb|BJ975411.1|BJ975411
EST:     GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAG                         GACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC
genomic: GACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 38

ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatc ... tcatacgcagGACTCTACCTACAAGTATTTCGAAATTATCTTGGTGGATCCCCAACACACCGTCATCCGCAAGGATCCCCGCATCAACTGGATTGTGAACCCTGTACACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttttcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca

- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG