Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg...

Basic information

species Physcomitrella patens
transcript PP1S14_433V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g07719.1 (Oryza sativa), 5'ss of exon 2
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatg----aactctcgctttcaaatgtcaattcatgttggtagtatg
|||| ||||||||| ||||||||||  | | ||||||||||||||| |||||| ||||||||||||| ||||| || |||||| |  ||||||||||||||| || ||     |  ||      || | | | ||   |  |||||| |  || |    ||    |  | |  ||||||    |   ||    ||| ||| |  
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgctcgcttacc---acatttttgtagctttgtaacttgcatgtgtgaggtgctgtacatatacctttcatgcttttgttgg-attgatagaaat

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg---------
|||| ||||||||| ||||||||||  | | ||||||||||||||| |||||| ||||||||||||| ||||| || |||||| |  ||||||||||||||| || ||        || |||||  |     |||  | |||   |||  || ||  | | ||||  |   |  ||    |  | ||| |      |  |         
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttc----tgcttaatttg-tgctcgcttaccacatt---ttttaggcttgttgt-aacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g07770.1 (Oryza sativa), 5'ss of exon 2
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgt------ctattta---tgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg
     ||||||||| ||||||||||  | | ||| ||||||||||| |||||  ||||||||||||| ||||| || |||||| |  ||||||||||||||||   | | |   ||||    | ||||       | ||||   | ||  |||||| |  || | |  |  | |     |||||    |   ||     ||        
----GAAGAAGGACTACAAGGATGGGAGGTTCTCTCAGGTTGTTTCTAACGCTCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtgatttctgattaatttgtgctcacgtaccacattttttaggttcatggtaacttgcatgtgtagggtagatttatcttttcatgcttttgtt-gcactg--------

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtg-atttaagacattttatttgacgtctatttatgatattaactttcgggtt--ttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg
|||| ||||||||| ||||||| ||  | | |||||||||||| ||||||||  | ||||||||||| ||||| ||||||||| |  | |||||||||||||  | |  |      |  ||| |  |  ||  ||     ||||    ||    |  ||  ||||     |  ||| | ||    |   || ||  || |   
ACAGGAAGAAGGACTACAAGGACGGGAGGTTCTCCCAGGTTGTCTCCAACGCGCTCGACATGAAGCTCAGGGATGATCTTGAGAGGCTCAAGAAGATCAGgtcagtacctcgtctgtcctatctcccccctgcttgccgaattagtactcaacctagtttgatgatggaaccgttttagattaagaactatttttttaat---

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G062911_T01 (Zea mays), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaatt--catgttggtagtatg----
 ||  ||||||||| |||| |||||| | | ||| |||||||||||||| ||| | ||||||||||| ||||| || |||||| |  | ||||||||  |||    | ||  ||  ||  |||   || ||||  |||| ||     |   | | | ||| |  |  |     || || |   ||  ||||    |  ||      
TCAACAAGAAGGACTACAAAGATGGTAGGTTCTCTCAGGTTGTTTCCAATGCCCTCGACATGAAGCTCAGGGATGACCTTGAGAGGCTCAAGAAGATTGGgt-cagtctattaccattgtttttgtgt-tattattgatttt----ctaatgctatatataagatgacatgcacacatatttgttgtcatggcattgctaaaaaca

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G08690.1 (Glycine max), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtg--tgatttaagacattttat-ttgacgtctatttatgata---ttaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg
| || ||||| ||| ||||||||||    || || ||||| || || || ||  |||| |||||| ||||||| ||| | |||||||||||||| ||||||||  | |||   |   || ||| |||| ||  | || | |||   |||| ||    |||| |||  |    | | ||||   | | | |  ||  ||        
ATAGGAAGAAAGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcattgtcgtatttgtatcttgatgttgaattttaatagaattaaattaaaagtttggtactaggagtgg-tttctttttttattggattatgaat-----

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggtt--ttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg
||||| | |||||  ||||||||||    |||||||| ||||||||||| ||  | ||||||||| |||| || |||||||||||  | |||||||||||||   |   || ||||         |  || | || | | |||  |  |  |||  | |||| ||   |  |  ||| |  |   |  |||   | ||    
ACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGgtaacaaacaacacatacagacactctcctctgta-gtttttagataccatgttaatagtat-aatgatgcccatcataactttctatatggaagaagctaa

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatt-taagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg-----
||||| |||| ||  ||||||||||    ||||| || ||||| ||||| ||| | ||||||||||| ||||| |||||||||||  | ||||| |||||||       | || |||||    |       || ||  ||  ||| | |   ||  | || |  || |     |    ||    | ||| ||  ||  |||     
ACAGACAGAAAGATTACAAGGATGGGAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccattagtcatttctgatcctaatcatataacatgataaatat---gtcctctaggggctttaataat--ggtggttttgcattttcttacaatgaacag

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtc--aattcat---gttggtagtatg
|||| ||||| ||  |||| |||||| | || || ||||||||||| || || |||||||||||||| ||||| ||||||||||| ||||||||||||||||   ||  |      ||| ||   |   || || |   | |   |   |    | ||   |  | |   |   ||||  |  || ||||    || | | | ||
ACAGGAAGAAAGATTACAAAGATGGTAGATATTCTCAGGTTGTTTCTAATGCATTGGACATGAAGCTCAGGGATGATCTTGAGCGTTTGAAGAAGATCAGgta--atcca---tccttttttcatctattacttttatcactctttgaagaacatggtgcaatttttttttcataaattcctaaagtcatcaaatttgcattttg

upper sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ22352 (Selaginella moellendorffii), 5'ss of exon 3
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtg--atttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg
|||| ||||||||| ||||||| ||  | ||||| ||||||||  | |||||  ||||||||||||| |||||||| || ||| |  | ||||||||||||   |   |||    | ||  || |   |   ||  |||  ||| ||||     || | |   |                                      
ACAGGAAGAAGGACTACAAGGACGGGAGGTACTCGCAGGTTGTGGCAAACGCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtttttccctttcaatctcttggggatggatgg-attgacttctttattgtttgacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162230970|gb|FC407225.1|FC407225
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162232248|gb|FC407772.1|FC407772
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162235758|gb|FC411061.1|FC411061
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162232249|gb|FC407773.1|FC407773
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162202825|gb|FC379807.1|FC379807
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162217729|gb|FC393821.1|FC393821
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|208344587|gb|DC909146.1|DC909146
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|100450815|gb|CJ974453.1|CJ974453
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162221578|gb|FC397595.1|FC397595
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162211535|gb|FC387615.1|FC387615
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|19790634|gb|BQ041977.1|BQ041977
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|7583669|gb|AW699576.1|AW699576
EST:     GCCTTGGACATGAAGCTGACGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGCGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|7648151|gb|AW739134.1|AW739134
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162221577|gb|FC397594.1|FC397594
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162223027|gb|FC399645.1|FC399645
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|19790327|gb|BQ041813.1|BQ041813
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|15729708|gb|BI741450.1|BI741450
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162230971|gb|FC407226.1|FC407226
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162243706|gb|FC420696.1|FC420696
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|15728585|gb|BI740864.1|BI740864
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162278921|gb|FC454972.1|FC454972
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|19781079|gb|BQ039654.1|BQ039654
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162267970|gb|FC444051.1|FC444051
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|15261826|gb|BI437136.1|BI437136
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162222018|gb|FC398585.1|FC398585
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162217806|gb|FC394106.1|FC394106
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162213760|gb|FC390375.1|FC390375
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162278920|gb|FC454971.1|FC454971
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTTTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162211536|gb|FC387616.1|FC387616
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162213890|gb|FC390089.1|FC390089
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162217807|gb|FC394107.1|FC394107
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162223518|gb|FC399148.1|FC399148
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162223026|gb|FC399644.1|FC399644
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162223519|gb|FC399149.1|FC399149
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|15729030|gb|BI741101.1|BI741101
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|162214369|gb|FC390088.1|FC390088
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|208378326|gb|DC923011.1|DC923011
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
EST: gi|15261246|gb|BI436564.1|BI436564
EST:     GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA
genomic: GCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 25

ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgattta ... gatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACACACCAAGACAACTGGAAGACGTGGTAGAACCGTCGGAGTGTCCAAGAAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA