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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCAGGGTCCTTCAAAGACAAGAATGGAAACCATATCGAGATGGGGCTGCACGTCTTTTTTGGATGCTACAATAATCTCTTTCGCCTTTTGGCTAAGgtactgtcgttgaatatattttactctgtgcgattttgattatttggttttatatatatatatatatatatatatatatacataaacagctgggggtaac...

Basic information

species Physcomitrella patens
transcript PP1S149_171V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S149_171V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 3
AAAAGCAGGGTCCTTCAAAGACAAGAATGGAAACCATATCGAGATGGGGCTGCACGTCTTTTTTGGATGCTACAATAATCTCTTTCGCCTTTTGGCTAAGgtactgtcgttgaatatattt--tactctgtgcgattttgattatttggttttatatatatatatatatatatatatatatacataaacagctgggggtaac
 ||||  || || ||    || | ||| || |||||||||||||||||||||||||| || || || || ||||  ||||| || |||||| ||   |||||| | |  |    | | |    |  |  | |    | |  || |   || || | |  || || |      ||  || |||    | | |     | |   
CAAAGTCGGTTCTTTTGTGGATAGGAAAGGGAACCATATCGAGATGGGGCTGCACGTGTTCTTCGGGTGTTACAGCAATCTTTTCCGCCTTATGAAGAAGgtaattttctatgttctttcagatggttggagaatgtctacttttcaagtattttgttaatctagactgcactaagtagataatggagctgagttagatg--

upper sequence: PP1S149_171V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G454952_T01 (Zea mays), 5'ss of exon 3
AAAAGCAGGGTCCTTCAAAGACAAGAATGGAAACCATATCGAGATGGGGCTGCACGTCTTTTTTGGATGCTACAATAATCTCTTTCGCCTTTTGGCTAAGgtactgtcgttgaatatattttactctgtgcgattttgattatttggttttatatatatatatatatatatatatatatacataaacagctgggggtaac--
 || |  || |||||    |||| | | |||||||||||||||||||||||||| || || || || |||||||  |||||||| |||||  ||   ||||||  | |  |   || | |   |||  ||  |   |  | |     ||   ||  ||  |||  || |   |   || |||| |     ||          
TAAGGTTGGCTCCTTTGTTGACAGGCAAGGAAACCATATCGAGATGGGGCTGCATGTGTTCTTCGGGTGCTACAGCAATCTCTTCCGCCTCATGAAGAAGgtaaaggcccttg-tacagtaagctcattggaagcatactgaaagtcttccttacctaggtatcaatgtggttg-gtacacattatgtcatgaaaactctga

upper sequence: PP1S149_171V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ20342 (Selaginella moellendorffii), 5'ss of exon 3
AAAAGCAGGGTCCTTCAAAGACAAGAATGGAAACCATATCGAGATGGGGCTGCACGTCTTTTTTGGATGCTACAATAATCTCTTTCGCCTTTTGGCTAAGgtactgtcgttgaatatattttactctgtgcgattttgattatttggttttatatatatatatatatatatatatatatacataaacagctgggggtaac
||| |  || || | | |||||||||| || ||||| |||||||||||  |||||||||||||||| |||||    ||||||| ||| ||  || | |||||    |  || || ||   ||||     | |||  |   | ||  |                                                     
AAAGGTTGGATCATACCAAGACAAGAACGGGAACCACATCGAGATGGGATTGCACGTCTTTTTTGGTTGCTATTGCAATCTCTATCGTCTCATGTCAAAGgtttgctttttaaagat---ttacaagcagtgatagtatcttttcag-----------------------------------------------------

upper sequence: PP1S149_171V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ28321 (Selaginella moellendorffii), 5'ss of exon 3
AAAAGCAGGGTCCTTCAAAGACAAGAATGGAAACCATATCGAGATGGGGCTGCACGTCTTTTTTGGATGCTACAATAATCTCTTTCGCCTTTTGGCTAAGgtactgtcgttgaatatattttactctgtgcgattttgattatttggttttatatatatatatatatatatatatatatacataaacagctgggggtaac
||| |  || || | | |||||||||| || ||||| |||||||||||  |||| ||||||||||| |||||    ||||||| ||| ||  || | |||||    |  || || ||   ||||     | |||  |   | ||  |                                                     
AAAGGTTGGATCATACCAAGACAAGAACGGGAACCACATCGAGATGGGATTGCATGTCTTTTTTGGTTGCTATTGCAATCTCTATCGTCTCATGTCAAAGgtttgctttttaaagat---ttacaagcagtgatagtatcttttcag-----------------------------------------------------