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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttacaccgacaattagttgaatgcatacaatgtgcctatatttagtattatgcgcttttgcgttgttttagttcatgtgagataggggttcccgt...

Basic information

species Physcomitrella patens
transcript PP1S142_132V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162244893|gb|FC424669.1|FC424669
EST:     GTCCTGAGGCACCACCCATTTTCAAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAA
genomic: GTCCTGAGGCACCAGCCATTTTC-AACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAA
EST: gi|162236289|gb|FC412032.1|FC412032
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|208396434|gb|DC920086.1|DC920086
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTNGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|208381293|gb|DC919183.1|DC919183
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|162259318|gb|FC436209.1|FC436209
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|162264798|gb|FC440365.1|FC440365
EST:     AGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: AGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|208380290|gb|DC922712.1|DC922712
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|208400875|gb|DC925155.1|DC925155
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
EST: gi|67698989|gb|BJ959222.1|BJ959222
EST:     GTCCTGAGGCACCAGCCATTTTCAACTGT                         GTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG
genomic: GTCCTGAGGCACCAGCCATTTTCAACTGTgtaagttaca ... tgctgaacagGTTATCGAGATTGGCAAGGGAAGCAAAGTGAAGTATGAGCTCGACAAGAAG