1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGCGAGGATATACACTCTTGCAGACCCCTTTCTTCATGCGACAGGAGGTGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcaccatctttatcttccattcgcattcctttgagtatgataatttctaagtttgttgaaagacgagagaggatcaatgtattagaagagcatattcagcttcgtggattattgattcgcatgacactggtctgctacag
species | Physcomitrella patens |
transcript | PP1S142_120V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACNAG GTGACTGGGGAAEST: gi|100364655|gb|BY947842.1|BY947842
genomic: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcacca ... tctgctacagGTGACTGGGGAA
EST: TGATGGCAGAGTGTGCTCAATTAGCGCAGGTTGACGAGGAGCTCTACAAG GTGACTGGGGAAEST: gi|162204300|gb|FC380488.1|FC380488
genomic: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcacca ... tctgctacagGTGACTGGGGAA
EST: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAG GTGACTGGGGAAGGTGATGATAAATACCTCATCGCTACTGCCGAGCAACCTEST: gi|100446744|gb|CJ971043.1|CJ971043
genomic: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcacca ... tctgctacagGTGACTGGGGAAGGTGATGATAAATACCTCATCGCTACTGCCGAGCAACCT
EST: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAG GTGACTGGGGAAGGTGATGATNAATACCTCATCGCTACTGCCGAGCAACCTEST: gi|162179840|gb|FC355911.1|FC355911
genomic: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcacca ... tctgctacagGTGACTGGGGAAGGTGATGATAAATACCTCATCGCTACTGCCGAGCAACCT
EST: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAG GTGACTGGGGAAGGTGATGATAAATACCTCAT
genomic: TGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcacca ... tctgctacagGTGACTGGGGAAGGTGATGATAAATACCTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGAGGATATACACTCTTGCAGACCCCTTTCTTCATGCGACAGGAGGTGATGGCAGAGTGTGCTCAATTAGCGCAGTTTGACGAGGAGCTCTACAAGgttagcaccatctttatcttccattcgcattcctttgagtatgataatttctaagtttgttgaaagacgagagaggatcaatgtattagaagagcatattcagcttcgtggattattgattcgcatgacactggtctgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT