1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCTGCACAGAACGTCGAGAGCTCACAATGTATAACCATGATGGAGGCTGTCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcatttgatttttttctggacggatgcctgtttcacggagtagaacttgtcctatcccctctttagtctttacaactttcaccctcagactgactgttaaatttcttctgcag
species | Physcomitrella patens |
transcript | PP1S139_2V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|208389382|gb|DC953220.1|DC953220
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|162177082|gb|FC353135.1|FC353135
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|37825490|gb|BJ583556.1|BJ583556
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|37836999|gb|BJ595007.1|BJ595007
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|162168482|gb|FC344133.1|FC344133
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|37845710|gb|BJ603718.1|BJ603718
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|162206973|gb|FC382982.1|FC382982
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|162177083|gb|FC353136.1|FC353136
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTGEST: gi|162167141|gb|FC343617.1|FC343617
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
EST: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAG GTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
genomic: TCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcattt ... tcttctgcagGTGGGAACTATCGGCGGCGGCACACAGTTGGCTTCACAATCAGCGTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCACAGAACGTCGAGAGCTCACAATGTATAACCATGATGGAGGCTGTCAATGGTGGTCAAGATTTACATGTCTCTGTTACGATGCCTTCAATTGAGgtatgcatttgatttttttctggacggatgcctgtttcacggagtagaacttgtcctatcccctctttagtctttacaactttcaccctcagactgactgttaaatttcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG