1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAATGTGGTGAATGGCGAACGAGGCCTTTTGATGTCGTCGCAAGAAAATGGCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtccactgaagttgttttggaagcataccccatgcgtagtttctgggaatgtcattatataccttgcagcattcatggaccaacatgcactagagctgtgttctgcattttgttcattattaacgtgatgatttgtattcttgcag
species | Physcomitrella patens |
transcript | PP1S138_43V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGAA-ATTGTGGAAGTGGGEST: gi|208397502|gb|DC908322.1|DC908322
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGG
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGAA-ATTGTGGAANTGGGGEST: gi|208353132|gb|DC913890.1|DC913890
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGG
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACC-AAG CTACTGANAGGATTGCC-AGTTATGTGAAEST: gi|100385660|gb|BY987725.1|BY987725
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAA
EST: GCGACTCCGACAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGCAGATTGTGGAAGTGCGGCCGCGAEST: gi|208358936|gb|DC939220.1|DC939220
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGGCCGCGA
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCNAAG CTACTGAGAGGATTGCCCAGTEST: gi|100429318|gb|BY978050.1|BY978050
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGT
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGGCCGCGAEST: gi|100436724|gb|BY979494.1|BY979494
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGGCCGCGA
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCNAG CTACTGAGAGGATTGCCCAGTEST: gi|162207542|gb|FC383995.1|FC383995
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGT
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGGCCGCGAEST: gi|208389798|gb|DC937433.1|DC937433
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAGTGGGGCCGCGA
EST: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAG CTACTGAGAGGATTGCCCAGTTATGTGA-GATTGTGGAAG
genomic: GCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtcc ... attcttgcagCTACTGAGAGGATTGCCCAGTTATGTGAAGATTGTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGTGGTGAATGGCGAACGAGGCCTTTTGATGTCGTCGCAAGAAAATGGCGACTCCGAAAATGCGAACACGGATGGGATGAAGCGCTTCCGACCCAAGgtgaatgtccactgaagttgttttggaagcataccccatgcgtagtttctgggaatgtcattatataccttgcagcattcatggaccaacatgcactagagctgtgttctgcattttgttcattattaacgtgatgatttgtattcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC