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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtcattcgacaccgttacattcctgccgaatttctttaagtattgggttttctttttgggtatgtagttattatttgtattaactgttttaatttttctgtcttcttctacag

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|18356860|gb|BJ188919.1|BJ188919
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|18356553|gb|BJ188612.1|BJ188612
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100411094|gb|BY956321.1|BY956321
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAACAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|18352296|gb|BJ184350.1|BJ184350
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|18351604|gb|BJ183656.1|BJ183656
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     AANATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100392655|gb|BY971818.1|BY971818
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCGAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCACCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|18363960|gb|BJ196033.1|BJ196033
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTTTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC                         ATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT
genomic: AAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 34

GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtc ... tcttctacagATTGGCTATGCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGTACAAGATGGAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAACgtaaggagtcattcgacaccgttacattcctgccgaatttctttaagtattgggttttctttttgggtatgtagttattatttgtattaactgttttaatttttctgtcttcttctacag

- - - - - - - - - AAGATG
- - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA