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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGACATGTAGGAAAGATCTGCCTTGGATGTTCTTTCCCGACATCGTACCAATGGGTCATCCAATTTTCGAAATTATCAACTCCACTGACCCAGAGgttgatgagacacaccgtattaatcattatcgtaccaaaaattgcagttttaagtactctcatcagatttgtgtagttctaaaccacgagctgaatttgt...

Basic information

species Physcomitrella patens
transcript PP1S134_54V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_54V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G20130.1 (Arabidopsis thaliana), 5'ss of exon 4
TATGGTGACATGTAGGAAAGATCTGCCTTGGATGTTCTTTCCCGACATCGTACCAATGGGTCATCCAATTTTCGAAATTATCAACTCCACTGACCCAGAGgttgatgagaca----caccgtattaatcattatcgtaccaaaaattgcagttttaagtactctcatcagatttgtgtagttctaaaccacgagctgaatttgt
 ||| | ||   |||  |  | |  ||||||||||| || || || || |||||||| |||||||| |||||||| || || ||||| ||||| || ||||| | | | |||      |  | |  || || |||    | ||| ||    | ||    |   || |   |  | |||  ||  |                   
GATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtag-taacacatttgtgctatttcgat-atcatcaactcgaaagttcttatctttctcaaagtcctttcacatttgtgcttacag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162235607|gb|FC411885.1|FC411885
EST:     TACCAATGGGTCATCCAATTTTCGAAATTATCAACTCCACTGACCCAGAG                         AAGGATTGGGATGTACGCATGGCTTGCTTGCTTTTATTGGCACTAGACACT
genomic: TACCAATGGGTCATCCAATTTTCGAAATTATCAACTCCACTGACCCAGAGgttgatgaga ... tggattgcagAAGGATTGGGATGTACGCATGGCTTGCTTGCTTTTATTGGCACTAGACACT