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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca...

Basic information

species Physcomitrella patens
transcript PP1S134_151V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 3
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca-
 ||||||||||||||| | ||   |||||| |||||||||||| | ||||||||||| || ||||| || || || || ||||| |||||| | ||  ||||| | |  |||   ||||  || || |||   |           |  | ||    ||      |||||  || |        | ||||  |  |    | 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatt--tga---tttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttt-tcattaattcctttgt--tttcattggcttaatgtag

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G024354_T01 (Zea mays), 5'ss of exon 3
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttg-cacgctca-tgagttatgtcta--aaacatcattgct---tgcaagacagctgcat-tttcaaatcaca-
 ||||||||||||||| | ||   ||||||||| ||||||||| | |||||||| || |||||||| || || || |||||||| |||||| | ||  |||||    |  |  || |  | |||   ||  |   |   ||  ||   |   |||| |||   |||  |  || ||   |||  ||||    ||| | ||  |||||| 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTCGCTGAGGAGAGAGCTGGACGTAAGCTTGGTGGACTGAGGGTTCTTAACTCCTACTGGGTGAATGAGgta---catcggattgtaacatgaacactcctctttaaacatactagcttgtttatatctgtcaaattttttttctaattgcctgacatgcccatatctcctatcacag

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagt-agtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca-
 ||||||||||||||| | ||   ||||||||||||||||||| | |||||||| || |||||||| || || || || ||||| |||||| | ||  |||||   | | |    ||   | | | |   |||     | |   ||||      ||||   |  |    |||   ||           ||     |  ||| 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaattgagttgagcttaacaagatatcatgagaattttcat---ccttgtc---agtactgatgcc-acatctggctcttgttactggacaacag

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 3
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtga-ctttttccgtga-gagcttattgcttgcacgctcatgagttat-gtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca-
 ||||||||||||||| | ||   ||||||||||||||||||| | |||||||| || |||||||| || || || || ||||| |||||| | ||  ||||| | | |  | |||     |||  ||||||||  |  |   ||    || || |  ||  |   |  | || | ||   |   |    ||    ||  ||| 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttgaaatcttgaattgtgccgagcttataacaagatagcatgagaattttcatcctagttagtactgat-gccttatctccttgttactgaacaacag

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G084757_T02 (Zea mays), 5'ss of exon 2
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgct--tgcaagacagctgcattttcaaatcaca-
 ||||||||||||||| | ||   ||| |||||||||||||| || |||||||| || |||||||| || || || || ||||| |||||| | ||  ||||| | |  ||| ||    || ||         | | ||| |   | || ||   ||  |   |  | || |     |   |       ||    ||  ||| 
CCAGCTCAAGTTCCAGAGGAACAAGAGATCTGTTGCTGAGGAACGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatact--tgaattgagtcgagattataacaagatagcatg---aggattttcatcctagttagtactgatgccttatctcgctcttgttactgaacaacag

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 5'ss of exon 3
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacat--cattgcttgcaagacagctgcattttcaaatcaca----
 |||||||| |||||||||| |  ||| |||||||||||||| || ||||| |||||||| || |||||||| ||  ||||||| |||||| ||||  |||||      | ||  | |   |     ||  |||||    |   |   |  | |||  | |  ||   ||    ||    |  | |   || ||   |        
ACAGCTCAAATTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgc--atcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372242|gb|BJ203844.1|BJ203844
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67709530|gb|BJ965346.1|BJ965346
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162261579|gb|FC437596.1|FC437596
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162255208|gb|FC431518.1|FC431518
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|18372011|gb|BJ203613.1|BJ203613
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|37828653|gb|BJ586665.1|BJ586665
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162278376|gb|FC454254.1|FC454254
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208391739|gb|DC937957.1|DC937957
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67693430|gb|BJ953663.1|BJ953663
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162230273|gb|FC406629.1|FC406629
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|37851837|gb|BJ609845.1|BJ609845
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162234474|gb|FC409505.1|FC409505
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67709503|gb|BJ965319.1|BJ965319
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162272999|gb|FC449130.1|FC449130
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162230274|gb|FC406630.1|FC406630
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162259234|gb|FC436164.1|FC436164
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|100358463|gb|BY983918.1|BY983918
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162218935|gb|FC395167.1|FC395167
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162203968|gb|FC380260.1|FC380260
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162203967|gb|FC380259.1|FC380259
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67704640|gb|BJ964873.1|BJ964873
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162226970|gb|FC403340.1|FC403340
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162264718|gb|FC440285.1|FC440285
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67727062|gb|BJ977321.1|BJ977321
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67718614|gb|BJ968873.1|BJ968873
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|100404702|gb|BY991240.1|BY991240
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|18349690|gb|BJ181740.1|BJ181740
EST:     GACGCAAACTTGGTGGCCTTANAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67721084|gb|BJ971343.1|BJ971343
EST:     TTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: TTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67722769|gb|BJ973028.1|BJ973028
EST:     ACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: ACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67570164|gb|BJ942988.1|BJ942988
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162217804|gb|FC394104.1|FC394104
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162275951|gb|FC452019.1|FC452019
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208396429|gb|DC920081.1|DC920081
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208352427|gb|DC906196.1|DC906196
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162264717|gb|FC440284.1|FC440284
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67717597|gb|BJ967856.1|BJ967856
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|37826884|gb|BJ584896.1|BJ584896
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|37842969|gb|BJ600977.1|BJ600977
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67727044|gb|BJ977303.1|BJ977303
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162234473|gb|FC409504.1|FC409504
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67718636|gb|BJ968895.1|BJ968895
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|18350515|gb|BJ182566.1|BJ182566
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162261580|gb|FC437597.1|FC437597
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67720668|gb|BJ970927.1|BJ970927
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208368005|gb|DC951016.1|DC951016
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|7047276|gb|AW477170.1|AW477170
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67692800|gb|BJ953033.1|BJ953033
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162226969|gb|FC403339.1|FC403339
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|18347801|gb|BJ179848.1|BJ179848
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|37852815|gb|BJ610823.1|BJ610823
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|100429626|gb|BY959657.1|BY959657
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67699601|gb|BJ959834.1|BJ959834
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162245469|gb|FC424062.1|FC424062
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67726111|gb|BJ976370.1|BJ976370
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|162245468|gb|FC424061.1|FC424061
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208383809|gb|DC903565.1|DC903565
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|208346508|gb|DC917461.1|DC917461
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
EST: gi|67569531|gb|BJ942355.1|BJ942355
EST:     GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAG                         GACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT
genomic: GACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 30

GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagt ... tcttgtgtagGACTCCACTTACAAGTACTTCGAAATTATCTTGATAGACCCACAGCACACTGTGATCCGCAAGGATCCCCGAATCAACTGGATCGTGAACCCAGTGCACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGCGCTGGACGCAAACTTGGTGGCCTTAGAGTCCTTAACTCTTACTGGATCAACCAGgtaaagtagtgactttttccgtgagagcttattgcttgcacgctcatgagttatgtctaaaacatcattgcttgcaagacagctgcattttcaaatcaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG