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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGGTTTAGCCTATCTTCATGAAGATTGTCATCCCCGCATTATTCACAGGGACATTAAATCTTCTAACATACTACTAGATGACAAATATGAGGCTCAGgttagtgtattatttaatagtttctggtactgttgacagtaggtgggctctctctctctctctcacatacacactttgctgttgcgtaaagtgcctactttggtatgcatactagtaacatttttgtgtcaagttttaggttttaattgcacattccttcttctgcag

Basic information

species Physcomitrella patens
transcript PP1S134_145V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_145V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 4
TCGAGGTTTAGCCTATCTTCATGAAGATTGTCATCCCCGCATTATTCACAGGGACATTAAATCTTCTAACATACTACTAGATGACAAATATGAGGCTCAGgttagtgtattatttaatagtttctggtactgttgacagtaggtgggctctctctctctctctcacatacacactttgctgttgcgtaaagtgcctactttggtatgcatactagtaacatttttgtgtcaagttttaggttttaattgcacattccttcttctgcag
                             |||||||||||||||||||| | ||||| |||||||| |||||||| || ||| |||  | ||| ||   ||| |    || || | |  | ||    || | | | || ||   ||        ||| ||| |||||   || ||   || ||  | ||  |   |      |                                                                 
-----------------------------GTCATCCCCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaa---catcatatga--gctt----tattctagtcattaaacgg--------tctttctttcaca---acgctgacctcttaagcaagttttttgtcacag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162207929|gb|FC383635.1|FC383635
EST:     GGGACATTAAATCTTCTAACATACTACTAGATGACAAATATGAGGCTCAG                         GTCGCTGATTTTGGACTGGCAAAGCTGGCATCAGACACACACACTCACGTT
genomic: GGGACATTAAATCTTCTAACATACTACTAGATGACAAATATGAGGCTCAGgttagtgtat ... tcttctgcagGTCGCTGATTTTGGACTGGCAAAGCTGGCATCAGACACACACACTCACGTT