Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGGGGGTGGTAATTTTGATGGCACTGATTCTGGAAAAGAATGCGTTGTCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATGgtgagaccacttgtccttgtcgttgaaattgcttgatctagccggtgtatgggaaagcgctgatgcagtaggtatgtcatcagttaaatacaacaaaatc...

Basic information

species Physcomitrella patens
transcript PP1S131_9V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S131_9V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv08s0040g01940.t01 (Vitis vinifera), 5'ss of exon 2
TGGAGGGGGTGGTAATTTTGATGGCACTGATTCTGGAAAAGAATGCGTTGTCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATGgtgagaccac--ttgtccttgtcgttgaaattgcttgatctagccggtgtatgggaaagcgctgatgcagtaggtatgtcatcagttaaatacaacaaaatc
    |  | |||| |||||||  ||| |||| | ||||||||||| ||| ||||  |||| ||||||||||| ||||||||||| || |||||||| ||||| ||  ||   |  |  || |  |||  || |||  |   |   |  | |  |  ||| ||| |   ||       || | | |   | ||   |   |  
CTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGgtaagtgcattatcttgtttatttttgggatggctgtaataaaatgaggaagcgagaagggctaaaatagcccaatggttagctgcccagtattccttga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832684|gb|BJ590696.1|BJ590696
EST:     TTGTCGACACATG                         TGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGC
genomic: TTGTCGACACATGgtgagaccac ... tggatcacagTGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGC
EST: gi|162169160|gb|FC345127.1|FC345127
EST:     TCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATG                         TGTATGTGCAGTGAATGCGCCAAGG
genomic: TCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATGgtgagaccac ... tggatcacagTGTATGTGCAGTGAATGCGCCAAGG