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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag

Basic information

species Physcomitrella patens
transcript PP1S131_139V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os04g55970.2 (Oryza sativa), 5'ss of exon 4
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtca---tgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag-------------------
         | || |||||||| || || || || || || || || ||  | || ||| | || ||||||||||| |||||||| | |||||||||||||| | |   | |  | | |      |  |   | |    |  ||| |    | ||    |  ||  |   |   ||    |  ||  || || ||| |  |   ||| |     |  || | |   |||  |  ||    |||  || || |   || || | ||                    
---------GTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGgtaattaactctcatgcatatatataaagatggatttattacatatttaca-atgcatgcatgatcaaaatatatagctcctgattgatgcaagtgtg-tagtaaaagcatgtgcatcatgcgtatatgtgtgt-gtgtttttggt-tgatgtatctttatggggcaagctgtttataatctttcag

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G086573_T01 (Zea mays), 5'ss of exon 5
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagt-catgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcg--agcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         | || |||||||| || || ||||| ||||| || || ||  | |||||  | || ||||||||| | |||||||||| |||||||||||||||  |||  || |      | |  ||   | |      ||  ||       ||||     ||||    ||      |  |||  |||     ||   | | |     || | ||     |||    |   || |     |||      ||| | | ||   |   
---------GTGGCTATGATAAGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCAGCTTTGAAGTACTGGGGTTCTAGCACCACCACCAACTTTCCGgtaagcgcatagatagacgtatgactagtagctataaaagaaaaaaagagagagacaaacg--ctgatgcagagtgtgtgcaatgaagcgtctaggtagagatatctaactatctgtgtgctggatgtatatatcgtctttatggggcaaaggattatcgtttcag--

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G38370.1 (Glycine max), 5'ss of exon 2
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         | || ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||  | | ||| || |  || ||||| ||||||    | |  | |       | || |  |   | ||| |||  |      |||  |  ||    |  | | ||  | | | || |  ||       ||   || ||| |  | |  |||                                         
---------GTGGTTATGATAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACCACAACAACAAATTTTCCAgtaagttgccactttttt-------tttcctgtttatgttaaataaatt------aagggtcgtg----ttgcacgaattcctctagccaaagt-------tggcgttggcactattaacaaac-----------------------------------------

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA18G47980.1 (Glycine max), 5'ss of exon 7
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         |||| ||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||  | |  || || |  || ||||| ||||||           ||||      |  |||| |  ||| ||  | | |   |   |  | ||  |   |    |||    |||  |  ||   ||||||  ||  ||  |                                                    
---------GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgtaagt-----------tgccacttaatttttcttcttctactttttttttttcctgtt--tatgttcaataaattaagagtcgtgttgcacgaattgctctaggcaaagttg----------------------------------------------------

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacg-ccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         | ||||||||||| ||||||||||| || ||||| || || |||||||| || || |||||||||||||   | |||| |||||| || ||||             ||| ||||  || ||||     | |     || |  | |  ||||    || |||   ||||  ||| |          ||   |   |  |   |    |||||   ||                                       
---------GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaa-------------tgcagtcacatctttcttgtattca-----gttttgatagatattagttgcatgaaatccaatacatat----------atataccaggactgaaaacgttgaggtggggc--------------------------------------

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G00950.1 (Glycine max), 5'ss of exon 5
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgt--gatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         | || ||||| || ||||| ||||||||||| || |||||  | ||||| ||||| ||||||||||| |  ||||||| ||||||||| ||||||         | | |  |||| |||       | |||||  | |||       |||| |    || |  | |  |  | |  | ||  |   |  ||  ||| | |  |  | | | | |   |    |||  |  | | ||     |              
---------GTGGTTATGACAAGGAAGATAAGGCAGCCAGGGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCCgtaagtagaaggatat-tcctttcatttcacaaatgggttaattttt-tgttt-----tattttttagttaatactatagtgtatt-caagtattcaacacttcgagttgataatctttaatgta--ataatacatttattttgcatttcacag-------------

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G31440.1 (Glycine max), 5'ss of exon 6
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         |||| ||||||||||||||||| ||||| ||||| || || ||||| || || |||||||||||    |||| |  || ||||        || |  |  |     |       | ||| ||||  ||  ||   | |   ||   ||      ||  |  |   |   |||    | |   || ||   | |  |||| | |    |                                              
---------GAGGTTATGATAAAGAAGAAAAAGCAGCTAGAGCGTATGATTTGGCGGCACTGAAATACTGGGG----AGCAACGACAACAAC-----AACAAATTTTCCAgtaaattttacgttctcactctgatgcgcatgcttat---catcggtgaatcaagtgttgcatta---cataattccaatatgttggcattaa-ttagaaataacaa----------------------------------------------

upper sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G33240.1 (Glycine max), 5'ss of exon 5
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaat-gtgtccacaagtattctgagcttgacgccaa-ggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
         | ||||||||||| ||||||||||| || ||| | || || |||||||| || || |||||||||||||   | |||| |||||| || ||||  ||   |     | |    ||    || ||       ||| | |  |  | |  ||| |   |  |||   ||  |   || | |    |    |                                                                   
---------GTGGATATGATAAGGAAGAAAAGGCCGCTAGATCTTATGATTTGGCAGCTCTGAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacttctttcttgtattcagttttgatagatcttagttgcatgaaaacatataccaggactgaaaacattgaggtgggaccgaaggagag-------------------------------------------------------------------