1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGTGGACGTGCCTGGACGTGCTTATCTTTGGAAAGCCGTCCGTGATCGGCGCGGTGCAAGGAATGATCACGGGTCTTGTCGTCATCACTCCCGCTGCAGgtaaccagtcgagcttcctgttctgattcctaaactaagcatttgagctcatttttcacggtggcattttgcacattagatctgaaacttctgataaaaatttgacgtagttcctttctacgatctgtacatttag
species | Physcomitrella patens |
transcript | PP1S12_395V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTCCCGCTGCAG GTCTCGTGCAAGGCTGGGCGGCGCTCGTGATGGGTGTGTTCGCCGGATCAGEST: gi|37839891|gb|BJ597899.1|BJ597899
genomic: ACTCCCGCTGCAGgtaaccagtc ... gtacatttagGTCTCGTGCAAGGCTGGGCGGCGCTCGTGATGGGTGTGTTCGCCGGATCAG
EST: GTCATCACTCCCGCTGCAG GTCTCGTGCAAGGCTGGGCGGCGCTCGAGATGGGTGTGTTCGCCGGATCAG
genomic: GTCATCACTCCCGCTGCAGgtaaccagtc ... gtacatttagGTCTCGTGCAAGGCTGGGCGGCGCTCGTGATGGGTGTGTTCGCCGGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGACGTGCCTGGACGTGCTTATCTTTGGAAAGCCGTCCGTGATCGGCGCGGTGCAAGGAATGATCACGGGTCTTGTCGTCATCACTCCCGCTGCAGgtaaccagtcgagcttcctgttctgattcctaaactaagcatttgagctcatttttcacggtggcattttgcacattagatctgaaacttctgataaaaatttgacgtagttcctttctacgatctgtacatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG