1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAAAGTCCAAGCTCTACTTGGTCCTTGACTTTATTAACGGTGGACATCTTTTTTTCCAGCTTTTTCGTCAAGGAACCTTCAAgtgagtgtccgactggtcagctgactgtaacttttgtgaaatttttgtgcgtggaaatgtcattgatgttctttcgtaaagctaaattgctgctgtgttg...
species | Physcomitrella patens |
transcript | PP1S129_113V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTAACGGTGGACATCNNNNNNNCCAGCTTTTTCGTCAAGGAACCTTCAA CGAGGATTTGGCACGCATGTACACTGCEST: gi|162164779|gb|FC341320.1|FC341320
genomic: ATTAACGGTGGACATCTTTTTTTCCAGCTTTTTCGTCAAGGAACCTTCAAgtgagtgtcc ... taatattcagCGAGGATTTGGCACGCATGTACACTGC
EST: ATTAACGGTGGACATCNNNNNNNCCAGCTTTTTCGTCAAGGAACCTTCAA CGAGGATTTGGCACGCATGEST: gi|162164767|gb|FC340489.1|FC340489
genomic: ATTAACGGTGGACATCTTTTTTTCCAGCTTTTTCGTCAAGGAACCTTCAAgtgagtgtcc ... taatattcagCGAGGATTTGGCACGCATG
EST: ATTAACGGTGGACATCNNNNNNNCCAGCTTTTTCGTCAAGGAACCTTCAA CGAGGATTTGGCACGCATGTACACTGCGGAGATAGTGCTGGCTGTTGCACA
genomic: ATTAACGGTGGACATCTTTTTTTCCAGCTTTTTCGTCAAGGAACCTTCAAgtgagtgtcc ... taatattcagCGAGGATTTGGCACGCATGTACACTGCGGAGATAGTGCTGGCTGTTGCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAGTCCAAGCTCTACTTGGTCCTTGACTTTATTAACGGTGGACATCTTTTTTTCCAGCTTTTTCGTCAAGGAACCTTCAAgtgagtgtccgactggtcagctgactgtaacttttgtgaaatttttgtgcgtggaaatgtcattgatgttctttcgtaaagctaaattgctgctgtgttg
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA