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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCTATTTGGGATTTATTTCTTTTCTCATTAGTCTCAAATACTTCCATCGTTAGTATGAACCTCAGCCTCATGCTCAACTCTGTGGGCTTCTATCAGgtcagtactgtcacgccatgaaactgcagtcgcgattcttaatcatgctgtgacctttgattgcgaaatcagaagatgctctcttgcgatgtacttagatttcaagtaataacgttgtttctcgattgtgagacag

Basic information

species Physcomitrella patens
transcript PP1S116_49V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S116_49V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G055216_T01 (Zea mays), 5'ss of exon 2
GATTCCTATTTGGGATTTATTTCTTTTCTCATTAGTCTCAAATACTTCCATCGTTAGTATGAACCTCAGCCTCATGCTCAACTCTGTGGGCTTCTATCAGgtcagtac----tgtcacgccatgaaactgc-agtcgcgattcttaatcatgctgtgacctttgattgcgaaatcagaagatgctctcttgcgatgtacttagatttcaagtaataacgttgtttctcgattgtgagacag
  | ||  | |||||  |  |    |||||  | ||| | || || ||||||    | |||||||||||||||||||||||||| || |||||||| |||||  ||||    ||    ||  ||| |  || ||  ||    | ||  |  ||  |    |  |  || |      |     || |      || |     |   | ||                                
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCTCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGCTTCTACCAGgtacgtacaccctgctctgctctgacagcgccagcggcagcgcctacgccggccat--tttcggcctgggttgcttgtgtgcgcgcgtggctgaagctgggaacctgcag-------------------------------

upper sequence: PP1S116_49V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AC194970.5_FGT005 (Zea mays), 5'ss of exon 2
GATTCCTATTTGGGATTTATTTCTTTTCTCATTAGTCTCAAATACTTCCATCGTTAGTATGAACCTCAGCCTCATGCTCAACTCTGTGGGCTTCTATCAGgtcagtactgtcacgccatgaaactg-cagtcgcgattcttaatcatgctgtgacctttgattgcgaaatcagaagatgctctcttgcgatgtacttagatttcaagtaataacgttgtttctcgattgtgagacag
  | ||  | |||||  |  |    |||||  | ||| | || || ||||||    | |||||||||||||||||||||||||| || || ||||| |||||  |   |     ||   ||  ||| ||||  |    ||     | || | | | | |  |||    | | |  | ||||    || |    |  | ||      | |                            
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCGCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGATTCTACCAGgtacgcctt----tgctccgagtctgacagtaccaggcct-----acgccgggccatctatttg---gacctgg-gttgcttctgtgtggctcaagttgagaatctgcag---------------------------

upper sequence: PP1S116_49V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G76670.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTCCTATTTGGGATTTATTTCTTTTCTCATTAGTCTCAAATACTTCCATCGTTAGTATGAACCTCAGCCTCATGCTCAACTCTGTGGGCTTCTATCAGgtcagtactgtcacgccatgaaactgcagtcgcgattcttaatcatgctgtgacctttgattgcgaaatcagaagatgctctcttgcgatgtacttagatttcaagtaataacgttgtttctcgattgtgagacag
  ||||| |||||||  |  |    |||||| | ||  | ||||  || |||| |  ||||||| | || || |||||||||||||| |||||||||||||| | |        | | || |  |    ||     | |   | ||          | |||||  | ||       |    | |    ||  | ||  | || |                                
TGTTCCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTATCGCTGCTATGAACTTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGgtaact-------tgtcttggagatttgctc-----tttcggttat----------tcgattgaaagattgttgttttgattttgcttattcattttcactttag-------------------------------