1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGGACAGTCGGGTTTCCTATTCTCAAGATCGGCACATCTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcag
species | Physcomitrella patens |
transcript | PP1S115_125V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAEST: gi|18365746|gb|BJ197823.1|BJ197823
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAEST: gi|18327622|gb|BJ159625.1|BJ159625
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAEST: gi|208361290|gb|DC930329.1|DC930329
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACAGTCGGGTTTCCTATTCTCAAGATCGGCACATCTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT