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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTGAGATGGGACTGGAGCTTTCTTTAGCGCGTCTTAAAGCTCTGGCGAAATTTGCTTTTGGCATAGGACTTGCCCAGgtatattcttcacacaagtaggatttaattgctgatttaaaaggacggtgtgcacgtcctctgttccacttgaagttacttcagaagatctgcatcaagagaagccccttcaccaacttgtaatttttcctgcag

Basic information

species Physcomitrella patens
transcript PP1S114_83V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S114_83V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTTGAGATGGGACTGGAGCTTTCTTTAGCGCGTCTTAAAGCTCTGGCGAAATTTGCTTTTGGCATAGGACTTGCCCAGgtatattcttcacacaagtaggatttaattgctgatttaaaaggacggtgtgcacgtcctctgttccacttgaagttacttcagaagatctgcatcaagagaagccccttcaccaacttgtaatttttcctgcag
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CTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAGgtttggttctaaaagatgttt--cttggtt--tgctttaaac------tccttacattccttcttatattttcacttctgtcagataagcatc-tcaagag-----tcatcagtga-------------------