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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCACGCAAACAACCTGGCCACCAAAATTCGAGGAAATCTTACCAACTCCATGAAGGCACTTGGTGTTGACATTCTGACTGGTTTTGGTTCTGTCGCGgtatgcaatctttgaccccagcactagacgaggtggatgcagaggtttttgaaacctaagacatctgaaatagttcatgaaccataagtgatgaccttgt...

Basic information

species Physcomitrella patens
transcript PP1S112_186V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 3
TGACCACGCAAACAACCTGGCCACCAAAATTCGAGGAAATCTTACCAACTCCATGAAGGCACTTGGTGTTGACATTCTGACTGGTTTTGGTTCTGTCGCGgtatgca-atctttgaccccagc--actagacgaggtggatgc-agaggtttttgaaacctaagacatctgaaatagttcatgaaccataagtgatgaccttgt--
|||||||||||  |||||||| ||||||||| |    ||||| ||||| || |||||||||||||||||||||||  |||| || |||||  ||||   |||  | |  |  ||| |    |   |||| |  |  |  |    | ||||  |||  |  |       || | |    || | |  | |  |||   || |||   
TGACCACGCAAGTAACCTGGCTACCAAAATTAGGAATAATCTCACCAATTCTATGAAGGCACTTGGTGTTGACATATTGACAGGGTTTGGCGCTGTTCTGgtcagtatgttattgtctttggttgactatataaactccaaatgataggtcgttgttatgtggtgatcctaatac---tctttagtcttttgtgc--actttgcag

upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 3
TGACCACGCAAACAACCTGGCCACCAAAATTCGAGGAAATCTTACCAACTCCATGAAGGCACTTGGTGTTGACATTCTGACTGGTTTTGGTTCTGTCGCGgtatgcaatc---------tttgaccccagcac-tagacgaggtggatgcagaggttt--ttgaaac----ctaagacatctgaaatagttcatgaaccataagtgatgaccttgt--
 || || || || || ||||| |||||||| |||   ||||| ||||| || ||||||||| |||||||||||||  ||||||| |||||   |||   |||  | | ||         ||  |  |   ||| |  || |  || |  |||     |  |  ||||    || | ||        ||  |||| | | |||  |  |     ||   
AGATCATGCTAATAATCTGGCTACCAAAATACGAAACAATCTGACCAATTCAATGAAGGCAATTGGTGTTGACATATTGACTGGATTTGGCAGTGTTCTGgtcagtactcagtagtacgttctattctttcacgtttactaactgtagacaggaacatgatacaaacttttcttaaacgatgatcctaactcat-atcaatattttgtatttctgcag