1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGAGCCGTGGTGAGAAGAAAAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcgtcatagcttcttttaacacgctatctaatctgaacatttatataaccgggaataagagtgtaatgttattttccatagttaatatggcca...
species | Physcomitrella patens |
transcript | PP1S10_319V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37847320|gb|BJ605328.1|BJ605328
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|67694196|gb|BJ954429.1|BJ954429
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|67570895|gb|BJ943719.1|BJ943719
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|7286954|gb|AW599441.1|AW599441
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|162200867|gb|FC377062.1|FC377062
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|19778194|gb|BQ039278.1|BQ039278
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: AAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37840258|gb|BJ598266.1|BJ598266
genomic: AAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|7067581|gb|AW497436.1|AW497436
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAAT ATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
genomic: TGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcg ... aaatttgcagATCCTCTTCGTGATCTCCGCTCCTGATGTGTTCAAGAGCCCTGCATCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGCCGTGGTGAGAAGAAAAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAGCCCGTGACCGATGTCACCCGAGTTACCATCAAGAAGAGCAAAAATgtatgcctcgtcatagcttcttttaacacgctatctaatctgaacatttatataaccgggaataagagtgtaatgttattttccatagttaatatggcca
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA