1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtttcatgatttgcttatggagcatgagaacttgctcttctttgattgaaatacacagaatatcaataattctcaatagtaggctagtacattttcctcttcacacgcatatgatgaaattcaagccagaagttactatcctcataaattgtgtgccgactttatgtcgcag
species | Physcomitrella patens |
transcript | PP1S10_28V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGEST: gi|100389168|gb|BY952372.1|BY952372
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAG
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCTEST: gi|162268877|gb|FC446011.1|FC446011
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCT
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCTEST: gi|162268876|gb|FC446010.1|FC446010
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCT
EST: CGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCTEST: gi|162238266|gb|FC415860.1|FC415860
genomic: CGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCT
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGTAATTTTTTCCGGGGAGCACATTGGGCTEST: gi|208348340|gb|DC905540.1|DC905540
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCT
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCTEST: gi|100430742|gb|BY978374.1|BY978374
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGAGCACATTGGGCT
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCNGGGAEST: gi|100355184|gb|BY965046.1|BY965046
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTTTTTCCGGGGA
EST: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG GTGGCTATTGTTGTANGAGGTGGCAATTT
genomic: CAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtt ... tatgtcgcagGTGGCTATTGTTGTAGGAGGTGGCAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAGgtaatgtgtttcatgatttgcttatggagcatgagaacttgctcttctttgattgaaatacacagaatatcaataattctcaatagtaggctagtacattttcctcttcacacgcatatgatgaaattcaagccagaagttactatcctcataaattgtgtgccgactttatgtcgcag
- - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG