1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTAGGAGAAAGTGTGTCGAAGCCTTTGCGTTACTACAGCAACAATCTAATAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatatttcccaccacaggggtagctcaagtggatagacactcaatgttactactgctcagttctcgtgaatgtcttaagatagtggttagtgagaagcatcctaccattaaaattcgtatctcttgaaattttaatatgagtggaccattggatgcag
species | Physcomitrella patens |
transcript | PP1S101_67V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAAACA-CTGCNAAAAT CTTGTGTTCTCATCTTTCAGCA-CAGTGTACGGACAACCGGAGTGCGTACCEST: gi|208350330|gb|DC906032.1|DC906032
genomic: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAA-CAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTT-CAGCAACAGTGTACGGACAACCGGAGTGCGTACC
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|208377704|gb|DC932240.1|DC932240
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100449045|gb|CJ973344.1|CJ973344
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|18358112|gb|BJ190171.1|BJ190171
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGGACAACCGGAGTGCGTACEST: gi|208375758|gb|DC936698.1|DC936698
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGG-ACAACCGGAGTGCGTAC
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100443377|gb|BY963673.1|BY963673
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100412936|gb|BY992508.1|BY992508
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCCAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100385898|gb|BY951092.1|BY951092
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAANCA-CTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100412296|gb|BY956511.1|BY956511
genomic: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAA-CAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGEST: gi|208387323|gb|DC933074.1|DC933074
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGG
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|162192491|gb|FC369121.1|FC369121
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100379480|gb|BY986659.1|BY986659
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGEST: gi|162192001|gb|FC367214.1|FC367214
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCG
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|208361787|gb|DC935027.1|DC935027
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100412866|gb|BY992475.1|BY992475
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAAACA-CTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100351733|gb|BY964522.1|BY964522
genomic: AAGCACCATTAATCTTATGGATGTCATGTCCAAGAA-CAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100435311|gb|BY979179.1|BY979179
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTTCAGCA-CAGTGTACGGACAACCGGAGTGCGTACCEST: gi|162231058|gb|FC406169.1|FC406169
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTT-CAGCAACAGTGTACGGACAACCGGAGTGCGTACC
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100423654|gb|BY976496.1|BY976496
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100369386|gb|BY948074.1|BY948074
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGNCA-CAGTGTACGGACAACCGGAGTGCGTACCEST: gi|100436738|gb|BY979501.1|BY979501
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAG-CAACAGTGTACGGACAACCGGAGTGCGTACC
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|208397832|gb|DC912027.1|DC912027
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100437309|gb|BY961456.1|BY961456
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCTEST: gi|100365706|gb|BY948371.1|BY948371
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
EST: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAAT CTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
genomic: TAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatat ... ttggatgcagCTTGTGTTCTCATCTTCAGCAACAGTGTACGGACAACCGGAGTGCGTACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGGAGAAAGTGTGTCGAAGCCTTTGCGTTACTACAGCAACAATCTAATAAGCACCATTAATCTTATGGATGTCATGTCCAAGAACAACTGCAAAAATgtgagaatatttcccaccacaggggtagctcaagtggatagacactcaatgttactactgctcagttctcgtgaatgtcttaagatagtggttagtgagaagcatcctaccattaaaattcgtatctcttgaaattttaatatgagtggaccattggatgcag
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