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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag

Basic information

species Physcomitrella patens
transcript PP1S101_208V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
| || ||||||||| | |||  ||||||||||||||||||||| ||||| |||||| | ||||||||| | || ||||| || ||||| || || |||||||          | ||  || ||         |||  ||| || | | ||||    ||  | ||  | | | |||     ||||| || | |||  ||                                              
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgta---------caacacattgt-------catggtacatcttgctttttgttcggat--gataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
                 |||  ||||||||||||||||||||| ||||| |||||| | ||||||||| | || ||||| || ||||| || || |||||||          | ||  || ||         |||  ||| || | | ||||    ||  | ||  | | | |||     ||||| || | |||  ||                                              
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgta---------caacacattgt-------catggtacatcttgctttttgttcggat--gataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgt---tcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
| || ||||| ||| | |||   ||||| |||||||||||||| ||||| |||||| | ||||| ||| | |||||||| || ||||| || || |||||||   |  ||    ||   ||||    || |  |   || ||  |  | || | | ||  |    |  |||                                                                            
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactga-cacatc-catgctctaattctgatatgttacag--------------------------------------------------------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 3
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggta-atacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
| || ||||||||| | |||  ||| |||||||||||||| || ||||| |||||| | || || ||||||||||| ||||| ||||| ||||| ||||||| | |       | |||    | | ||  |||      |||||| | |   |    |    |     |  || |||   ||||  |    |                                                     
TCACCACTGGTGCCAGGGAGAGCGCTTTCAGGAACATCAAAACCATTGCTGAGTGCCTTGCAGATGAGTTGATCAACGCTGCCAAGGGCTCTTCCAACAGgtatatatatcctgtctggctatatttggttgtt-----tttttcctatctgcgatgtgaattgtgctcattcatggcaattcttgtcacag-----------------------------------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
  || ||||| ||||| ||| |||||||| | ||||||||||| |||||||||||| ||||||||||| || | || ||||| ||||| || || ||||||||   || |   |  |  |||   |      |||   |   || | |  | || |  | |     | ||    ||   |  ||     |   ||||   |        || | |                             
--ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTg---ggcgcctgcgtactagcacg-----atgggctaggattggaggcgccagaggccgccgtgaggcgggcggcagtggtgccgggttggtcaggcat-------ccaagaaaa---------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 4
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
| || ||||| || || |||   || ||| | ||||||||||| || || |||||| | ||||||||| |||| |||||||| ||||| || || |||||||   |  |       |  |||    ||| | || |  |   |  | | |  | |  |  | |  |  ||    |                                                                     
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttcctacattgttc-tagctcatgctt-tgaaagaaactaagagct--ccttctgtgcttgtttgcatcag---------------------------------------------------------------------

upper sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 4
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag
| || ||||| || || |||   || ||| | ||||||||||| || || |||||| | ||||||||| |||| |||||||| ||||| || || |||||||   |  |       |  |||    ||| | || |  |   |  | |    | |  |  | |  |  ||    |                                                                     
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttcctacattgttc-tagctcatgctt-tgaaagaaactaagagcc--ccttctgtgcttgtttgcatcag---------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850596|gb|BJ608604.1|BJ608604
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|37839850|gb|BJ597858.1|BJ597858
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162237504|gb|FC413613.1|FC413613
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67720078|gb|BJ970337.1|BJ970337
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162237505|gb|FC413614.1|FC413614
EST:     GATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAATGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|18338455|gb|BJ170479.1|BJ170479
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTG-GGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162236998|gb|FC412949.1|FC412949
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|37839339|gb|BJ597347.1|BJ597347
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67696498|gb|BJ956731.1|BJ956731
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67725656|gb|BJ975915.1|BJ975915
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162243879|gb|FC423196.1|FC423196
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67696110|gb|BJ956343.1|BJ956343
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162243102|gb|FC416702.1|FC416702
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67697648|gb|BJ957881.1|BJ957881
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162241814|gb|FC418069.1|FC418069
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162250519|gb|FC428422.1|FC428422
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGGTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67726461|gb|BJ976720.1|BJ976720
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67717134|gb|BJ967393.1|BJ967393
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67574244|gb|BJ947068.1|BJ947068
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162243878|gb|FC423195.1|FC423195
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGNNNNNNNAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67573113|gb|BJ945937.1|BJ945937
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|18368029|gb|BJ200113.1|BJ200113
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGA
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGA
EST: gi|162243101|gb|FC416701.1|FC416701
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|67717958|gb|BJ968217.1|BJ968217
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
EST: gi|162266196|gb|FC441725.1|FC441725
EST:     GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAG                         CTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG
genomic: GAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 18

TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtg ... gtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCGTTAAGCTAGTTTTGGGATGGTTATTGTACACAAAGATTGTTTTTTAATA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC