Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGTACACCTGCTGTCTGGAGGAAGCCGAGATGGTGCGTCCGGGAACGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgggatcctaaaccctccttggaattctatgtagcatactgcttttgaggacgggcttttggagttgcaaggattgtaaacgtgggccgaatggggatggcatgtttgtgggcggggttggtgcag

Basic information

species Physcomitrella patens
transcript PP1S101_170V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162249333|gb|FC424835.1|FC424835
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162166415|gb|FC342397.1|FC342397
EST:     TGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: TGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162171201|gb|FC347178.1|FC347178
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208393784|gb|DC946078.1|DC946078
EST:     CCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162233986|gb|FC410499.1|FC410499
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|37835367|gb|BJ593379.1|BJ593379
EST:     GGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCNTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: GGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162188985|gb|FC364375.1|FC364375
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208359737|gb|DC946613.1|DC946613
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208397914|gb|DC916669.1|DC916669
EST:     GACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: GACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162166416|gb|FC342398.1|FC342398
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162154877|gb|FC331919.1|FC331919
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|37829882|gb|BJ587894.1|BJ587894
EST:     GGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCNTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: GGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|67720088|gb|BJ970347.1|BJ970347
EST:     TCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: TCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162233959|gb|FC410498.1|FC410498
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208374788|gb|DC948704.1|DC948704
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162191607|gb|FC367652.1|FC367652
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCTAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208367666|gb|DC955011.1|DC955011
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162249334|gb|FC424836.1|FC424836
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|37845062|gb|BJ603070.1|BJ603070
EST:     ATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: ATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162191606|gb|FC367651.1|FC367651
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCTAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|67726686|gb|BJ976945.1|BJ976945
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|208371208|gb|DC956000.1|DC956000
EST:     CGGACATCACNATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162168640|gb|FC343902.1|FC343902
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
EST: gi|162171200|gb|FC347177.1|FC347177
EST:     CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAG                         GCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC
genomic: CGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 30 (downstream exon)
Score: 5

CGAGGAGTACACCTGCTGTCTGGAGGAAGCCGAGATGGTGCGTCCGGGAACGGACATCACAATCTTGACCTACTCCCGGATGAGATATCACGTGACGCAGgtgatgctgg ... gttggtgcagGCTGCAAAGACCCTGGTGGACAGAGGGTACGACCCAGAGATCATCGACATCAGGTCTCTGAAGCCATTCGATATGTACACAATCGGGGAGTCCGTGAAGA




<











<


<