1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACAGCTACAGCTCGCATTACCGGGAGTTCGAGTGCATGAGACTTGAAATGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCATgtaagcaattgttcgtgcgagcttctgtgcaaatcgtaagctctgttttacatgcaacaaggctcattgttcttacgtctcgaaggatcgattccttttgggtgtgtgactttggcag
species | Physcomitrella patens |
transcript | PP1S101_103V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGAGCTGCTTTACTCNTACAAAGTGAACATCGTCTTCTCGGGTCAT GTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCCEST: gi|162180270|gb|FC355275.1|FC355275
genomic: TGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCATgtaagcaatt ... actttggcagGTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCC
EST: TGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCAT GTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCCEST: gi|208379193|gb|DC927336.1|DC927336
genomic: TGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCATgtaagcaatt ... actttggcagGTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCC
EST: TGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCAT GTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCC
genomic: TGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCATgtaagcaatt ... actttggcagGTTCATGCGTATGAGCGAACAAATCAAGTGTATAATTACACGTTGAATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAGCTACAGCTCGCATTACCGGGAGTTCGAGTGCATGAGACTTGAAATGGAGGAGTTGCTTTACTCCTACAAAGTGAACATCGTCTTCTCGGGTCATgtaagcaattgttcgtgcgagcttctgtgcaaatcgtaagctctgttttacatgcaacaaggctcattgttcttacgtctcgaaggatcgattccttttgggtgtgtgactttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG