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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgcacatcttctgctttgctcctgatatattagatgatcacatttgaattgattttagaataaacttttcttcaagtctgattatttggaatgggagtgcag

Basic information

species Physcomitrella patens
transcript PP1S129_147V6.1
intron # 27
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186786|gb|FC362822.1|FC362822
EST:     TGAAAGTAGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162197287|gb|FC372249.1|FC372249
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162167451|gb|FC343154.1|FC343154
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATNGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162177883|gb|FC355133.1|FC355133
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162243942|gb|FC424286.1|FC424286
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162197288|gb|FC372250.1|FC372250
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|37848274|gb|BJ606282.1|BJ606282
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162196025|gb|FC372703.1|FC372703
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|18337956|gb|BJ169980.1|BJ169980
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|208385867|gb|DC956705.1|DC956705
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|37844500|gb|BJ602508.1|BJ602508
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162196024|gb|FC372702.1|FC372702
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
EST: gi|162161758|gb|FC337899.1|FC337899
EST:     TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG                         GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG
genomic: TGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAGgttgggtgca ... gggagtgcagGAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG