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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGACTGTTCTTCCACCATCCTAAGTTTGGGATTCTTGACGAGTGCACGAAgtaatgttcaccgcccattttcttctgtacattatttattaagacttaaagagttatccattgcaagtccatgctcgggagtaattattgaattttcgtc...

Basic information

species Physcomitrella patens
transcript PP1S105_6V6.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S105_6V6.1 (Physcomitrella patens), 5'ss of exon 27
lower sequence: LOC_Os05g01700.1 (Oryza sativa), 5'ss of exon 21
GCACGACTGTTCTTCCACCATCCTAAGTTTGGGATTCTTGACGAGTGCACGAAgtaatgttcaccgcccattttcttctgtacattatttattaagacttaaagagttatccattgcaagtccatgctcgggagtaatt-attgaattttcgtc
|| ||  |||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||| |   |||     | |  |  |||||  || |    | ||   || | |   | |||   |||    |      || || |||| |        
GCCCGTTTGTTTTTCCACCATCCTAAATTTGGTATTCTTGACGAATGCACGAAgta-tgtgctgagccatgactttgattgacatttcttctctttatttgctga-taaattagtgcggttcc----taaaagatacttcattgcag-------

upper sequence: PP1S105_6V6.1 (Physcomitrella patens), 5'ss of exon 27
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 23
GCACGACTGTTCTTCCACCATCCTAAGTTTGGGATTCTTGACGAGTGCACGAAgta-atgttcaccgcccattttcttctgtacattatttattaagacttaaagagttatccattgcaagtcc-atgctcgggagtaattattgaattttcgtc
|| ||  |||| ||||| |||||||||||||| || || ||||||||||| |||||  |||||     | || ||| | |  |  |  |  |||      |      | |   | ||   || | |   ||  |  | || |||| |        
GCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAAgtacgtgttctgtcacaatgttccttttgatttattgcatttccttctctcttatcaattactgtgggttctaaattcttgcttgatgattgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37821150|gb|BJ579216.1|BJ579216
EST:     CGACTGTTCTTCCACCATCNTAAGTTTGGGATTCTTGACGAGTGCACGAA                         TGCTACCAGTGTGGATGTGGTAGAAGGCTTGTACAAGAAGGCTCAGTCTCT
genomic: CGACTGTTCTTCCACCATCCTAAGTTTGGGATTCTTGACGAGTGCACGAAgtaatgttca ... caacattcagTGCTACCAGTGTGGATGTGGAAGAAGGCTTGTACAAGAAGGCTCAGTCTCT