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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTGACTAAGTGGCACCTTATTAGCGTTGGTGGCAGTATCGGAGGTTGGTTTGTGTTTGCTTCTGTGTACTCTGGGATCCAGGTTAGCTTCATACAGgtaatgattgttcaccgaggtctctgattttcaattttaattcctgaaacgaggggtttattttagtgtggcgcgggtattgcttagacttcctgaatcc...

Basic information

species Physcomitrella patens
transcript PP1S87_152V6.1
intron # 25
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842413|gb|BJ600421.1|BJ600421
EST:     GTTTGTGTTTGCTTCTGTGTACTCTGGGATCCCAGGTTAGCTTCATACAG                         GAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
genomic: GTTTGTGTTTGCTTCTGTGTACTCTGGGAT-CCAGGTTAGCTTCATACAGgtaatgattg ... tcatgtgcagGAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
EST: gi|162190566|gb|FC366204.1|FC366204
EST:     GGATCCAGGTTAGCTTCATACAG                         GAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
genomic: GGATCCAGGTTAGCTTCATACAGgtaatgattg ... tcatgtgcagGAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
EST: gi|162179020|gb|FC356421.1|FC356421
EST:     TACTCTGGGATCCAGGTTAGCTTCATACAG                         GAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
genomic: TACTCTGGGATCCAGGTTAGCTTCATACAGgtaatgattg ... tcatgtgcagGAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
EST: gi|162153770|gb|FC329173.1|FC329173
EST:     GGTTTGTGTTTGCTTCTGTGTACTCTGGGATCCAGGTTAGCTTCATACAG                         GAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG
genomic: GGTTTGTGTTTGCTTCTGTGTACTCTGGGATCCAGGTTAGCTTCATACAGgtaatgattg ... tcatgtgcagGAGAACATTTACTGGGTGATGTTTACTTTGTTAGGCACCTGGTTCTTTTGG