1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATCTTTTCTTGGTTTGGCTAAAGAGCGTTCCCTTGGCACGGATATCAAACCCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatctactcccatttgatgcacacaacttttttccttctcagcagttgcatgcactttccttctgccctgcactcatttaccggttcatttcttccctcgtgcctgcttacttaataatgtcctaattttggctcatggggttttgattgggcag
species | Physcomitrella patens |
transcript | PP1S47_192V6.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAAEST: gi|162171074|gb|FC346973.1|FC346973
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAAEST: gi|162152257|gb|FC328236.1|FC328236
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAAEST: gi|162186488|gb|FC363252.1|FC363252
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAAEST: gi|162193562|gb|FC370465.1|FC370465
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAAEST: gi|162186489|gb|FC363253.1|FC363253
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
EST: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAG GAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
genomic: CCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatc ... gattgggcagGAAATATCACGGTTGCAGAAAGTTGACGGTCTCGGGTCTGCAGGCGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTTTCTTGGTTTGGCTAAAGAGCGTTCCCTTGGCACGGATATCAAACCCCAAGCTCGTATTATTGCACAGTATAAGGTTGCTGTACAGCTTTTGCAGgtaactaatctactcccatttgatgcacacaacttttttccttctcagcagttgcatgcactttccttctgccctgcactcatttaccggttcatttcttccctcgtgcctgcttacttaataatgtcctaattttggctcatggggttttgattgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT