1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATGCCACTGCATACTATTATTGAGATTCAAATGGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccgtgagccggatctgatgataaatagtttcttgtttacgtcttcgtactgtgcatttcgttgtacatatatcgttgtcgtcacgtttgtcag...
species | Physcomitrella patens |
transcript | PP1S242_66V6.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: GCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCTEST: gi|162190523|gb|FC366161.1|FC366161
genomic: GCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
EST: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCTEST: gi|162256997|gb|FC432736.1|FC432736
genomic: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
EST: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCTEST: gi|67695981|gb|BJ956214.1|BJ956214
genomic: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
EST: GTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCTEST: gi|162230830|gb|FC406669.1|FC406669
genomic: GTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
EST: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCTEST: gi|67693913|gb|BJ954146.1|BJ954146
genomic: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
EST: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGA GCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
genomic: GGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccg ... gcaatggcagGCACCAAATACGGTGAATTCCCATGAGTATGGCAGTCCTAAGCAGTTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCACTGCATACTATTATTGAGATTCAAATGGGAGTTACTGGTGTTCAGGAGAAGCGATACAAGCTCATGGAGACCCAGAgtacgtcccgtgagccggatctgatgataaatagtttcttgtttacgtcttcgtactgtgcatttcgttgtacatatatcgttgtcgtcacgtttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA