1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GCTGAAACAAATAAAGTGAAAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatctgatcctctaagcatctgtttatcttgtttgtttgtggtcttgagaagaaatttggaaccaacaagagttttttttaggattaaacgcctagatttttttttttggtcaagacattgagtggctctatttgacgcaggcgagttgcttgtgattcatccag
species | Physcomitrella patens |
transcript | PP1S195_4V6.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATG GTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCCEST: gi|162258720|gb|FC434519.1|FC434519
genomic: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatct ... attcatccagGTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
EST: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATG GTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCCEST: gi|162180730|gb|FC357815.1|FC357815
genomic: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatct ... attcatccagGTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
EST: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATG GTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCCEST: gi|162227173|gb|FC402816.1|FC402816
genomic: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatct ... attcatccagGTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
EST: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATG GTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCCEST: gi|162226809|gb|FC402815.1|FC402815
genomic: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatct ... attcatccagGTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
EST: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATG GTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
genomic: AAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatct ... attcatccagGTTCGAAGTTGTGCTGACGTTGATACGCTTGAAGGCATTTTGGAGTGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAAACAAATAAAGTGAAAGGATTTGGAGTCATGATTTTCCAGATTGAGGGTACTGCTGAAGACATGgtatgcatctgatcctctaagcatctgtttatcttgtttgtttgtggtcttgagaagaaatttggaaccaacaagagttttttttaggattaaacgcctagatttttttttttggtcaagacattgagtggctctatttgacgcaggcgagttgcttgtgattcatccag
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA