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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCACTCGATTAGAAAAGTTTCTGGAACGATATGACAACTTTGACGACCCTGTCATTCCTAAGTTTCACTATGGCTCTCATTACTCAAGTGCTGGCACGgtaggcaacctttatcctttcttttcaaatttgtgatgtgcccagttccggtggctgacatcgttttctgtgcttacttcacttcattttggatgtgttgtgctgttctatcgtgaatacctattaccaaccattctgattatcatggcctggttgtggagcag

Basic information

species Physcomitrella patens
transcript PP1S88_98V6.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S88_98V6.1 (Physcomitrella patens), 5'ss of exon 22
lower sequence: GRMZM2G044143_T01 (Zea mays), 5'ss of exon 22
TCCCACTCGATTAGAAAAGTTTCTGGAACGATATGACAACTTTGACGACCCTGTCATTCCTAAGTTTCACTATGGCTCTCATTACTCAAGTGCTGGCACGgtaggcaacctttatcctttcttttcaaatttgtgatgtgcccagttccggtggctgacatcgttttctgtgcttacttcacttcattttg-gatgtgttgtgctgttctatcgtgaatacctattaccaaccattctgattatcatggcctggttgtggagcag-------------------
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CCCTGAACGTCTAAAGAAGTTCCAAGAACGGTACTCTACATTCGAGGATCCAATCATACCAAAGTTTCATTATGGTTCACATTACTCCAGTGCTGGCACGgtat---atcttcatagtagatat--gaatccgatgtttacttagaattctggatttgcaa-------tgtgaattccttgctcgattatgtggcctgcaattttgatatttggtcattgtccagtgcatact-tggttatcacaatgtttgatttgtgtactaattactactatccctttcag

upper sequence: PP1S88_98V6.1 (Physcomitrella patens), 5'ss of exon 22
lower sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 23
TCCCACTCGATTAGAAAAGTTTCTGGAACGATATGACAACTTTGACGACCCTGTCATTCCTAAGTTTCACTATGGCTCTCATTACTCAAGTGCTGGCACGgtaggcaacctttatcctttcttttcaaatttgtgatgtgcccagttccggtggctgacatcgttttctgtgcttacttcacttcattttggatgtgttgtgctgttctatcgtgaatacctattaccaaccattctgattatcatggcctggttgtggagcag
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TCCTGATCGGCTGACAAAATTCCAAGAGAGATACTCCAGCTTTGATGATCCTATCATTCCCAAGTTCCACTATGGTTCACATTACTCAAGTGCTGGAACAgtaggttttccat-taatttatctttggaagtgtttcctgacaggggtcagagtcacacat---tttctgtactcatttca--taagtttggttggagtttgtagt----------------------------------------------------------