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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcgacactttcatgaaaattccgtacaaggattttggcagttgtaccttatcttcaagcaccctaaaaagagccactagattagggacgttcctctacatttactcatattttaaattttgaatcaccataatttttcgacaaaaattcacctatgttaattatttaatcatgtgaag

Basic information

species Physcomitrella patens
transcript PP1S2_217V6.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256773|gb|FC432667.1|FC432667
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162178087|gb|FC354389.1|FC354389
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162167759|gb|FC344073.1|FC344073
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162174994|gb|FC350893.1|FC350893
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162174995|gb|FC350894.1|FC350894
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162191638|gb|FC367683.1|FC367683
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
EST: gi|162178086|gb|FC354388.1|FC354388
EST:     CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG                         CTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA
genomic: CTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAGgtactcctcg ... tcatgtgaagCTGTCGGAGGCAAGTGGGAGTTCACTCGGATACGGCACAACTCGCAGCAAA