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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGGAGGTTAGAGGAGGCAAGTGAACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggcttgtattccacattgtcctctttgtatggagttcagatgatgtgcttcggatttttagtttttcaacctattattgatactagtacaattcccttttctaatggggcgtgtcaattccatagttaatgttattcttgtggctagagcag

Basic information

species Physcomitrella patens
transcript PP1S427_2V6.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826074|gb|BJ584086.1|BJ584086
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|37824994|gb|BJ583060.1|BJ583060
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|162199020|gb|FC372371.1|FC372371
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|162154935|gb|FC331977.1|FC331977
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|161979267|gb|EE296320.1|EE296320
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|162183628|gb|FC359882.1|FC359882
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|162158726|gb|FC335574.1|FC335574
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: gi|162242567|gb|FC414971.1|FC414971
EST:     AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG                         CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA